Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0184
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427...    28   8.5  
12_01_0599 - 4892146-4893552                                           28   8.5  
08_02_0929 + 22694917-22695072,22695399-22695781,22698637-226987...    28   8.5  

>12_02_0588 -
           20842209-20842337,20842464-20842560,20842620-20842733,
           20843140-20843749,20844739-20845462,20845542-20845620,
           20845783-20845865,20846148-20846226,20846332-20846420,
           20846499-20846591,20847288-20847337,20847417-20847600,
           20849227-20849542,20849626-20849657
          Length = 892

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 33  WCCKPTNKSRHRGS--CETRRR*HSCDXQLRGHDSNSRWNAGW 155
           +C +P++K+   G   C    R HSC   + G   ++RW  G+
Sbjct: 218 YCQQPSHKNVTHGPYLCPKHTRCHSCGSGVPGSGHSTRWFLGY 260


>12_01_0599 - 4892146-4893552
          Length = 468

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 303 GAGAQASNTPQFVTLVKTSTGMTVATMPKVAMMNRSGAAVSQAQNI 440
           GA A+     Q+  LV T+ G T+A    +  + R+G   +   N+
Sbjct: 111 GANAKLCGIIQYANLVGTAVGYTIAASISMQAIKRAGCFHANGHNV 156


>08_02_0929 +
           22694917-22695072,22695399-22695781,22698637-22698769,
           22698870-22699312,22699786-22699864
          Length = 397

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 428 LRNGCSRPVHHCYFWHSCY 372
           L NG  +  HHCY  H CY
Sbjct: 269 LGNGHRQQHHHCYTGHQCY 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,735,644
Number of Sequences: 37544
Number of extensions: 374699
Number of successful extensions: 877
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)