Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0184
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   0.93 
SB_48623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 921

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 30  GWCCKPTNKSRH---RGSCETRRR*HSCDXQLRGHDSNSRWNAGWPTSKNTCI*DIDSKI 200
           GW  K TNK+ +   R +  T    H C   LR +D N    AG+ TS  TCI D  S +
Sbjct: 802 GWG-KTTNKTVYTDLRQANVTLVHRHRCSWALRNYDGNRLLCAGFLTSDVTCISDSGSPL 860


>SB_48623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 311 CASK*YTAICYPCEDLNGHDCSNYAKSSNDEQVWSSRFSSTKHHSGGHYCKVS 469
           C+S   T + YPC           + ++ D   W+SRF+S K H   +Y   S
Sbjct: 58  CSSATMTTVYYPC-----------SSATMDSSAWNSRFASVKLHRQKNYMATS 99


>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 3   KNSRRNALTGWCCKPTNKSR 62
           K  RR+A   W CKPT+K R
Sbjct: 140 KAIRRDARINWICKPTHKHR 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,057,777
Number of Sequences: 59808
Number of extensions: 401039
Number of successful extensions: 1007
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)