Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0184
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL032627-9|CAB63355.2|  118|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF016670-9|AAB66107.2|  701|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 330 PQFVTLVKTSTGMTVATMPKVAMMNRSGAAVSQAQNITPGATIVKLVSNTVGGNKIITLP 509
           P   +   T+T ++V+T   V     SG  ++ A + TPG  +  +V +   GNK   +P
Sbjct: 522 PSLYSSFATTTSLSVSTANSVT----SGYQIANATSCTPGPYVHNVVVSASDGNKYRAVP 577

Query: 510 LIC 518
             C
Sbjct: 578 GYC 580


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
            protein H02F09.3 protein.
          Length = 1275

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +3

Query: 276  GIPVIIKKTGAGAQASNTPQFVTLVKTSTGMTVATMPKVAMMNRSGAAVSQAQNITPGAT 455
            G   +   TG+ A  S+T    T    + G T +T+    +   S  + S    IT G+T
Sbjct: 898  GESTVFGSTGSTATGSSTMSASTGSTDTPGSTESTITGSTVTGESTVSGSTGSTITEGST 957

Query: 456  IVKLVSNTVG 485
            I +    TVG
Sbjct: 958  ISESTMTTVG 967


>AL032627-9|CAB63355.2|  118|Caenorhabditis elegans Hypothetical
           protein Y41C4A.6 protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -2

Query: 424 ETAAPDLFIIATFGIVATVMPVEV--FTRVTNCGVLLACAPAPVFFMMTGIPAL 269
           E   PD F+ A  GI++T+  +++  F + +     ++ +P P+F +  GIPA+
Sbjct: 53  EKLMPD-FMAANPGIMSTMESLKLSDFGKTSTVVPSISTSPGPIFTLANGIPAV 105


>AF016670-9|AAB66107.2|  701|Caenorhabditis elegans Hypothetical
           protein K02F6.9 protein.
          Length = 701

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 344 PCEDLNGHDCSNYAKSSNDEQVW 412
           PCED   H C  Y++   D+  W
Sbjct: 49  PCEDFFEHTCGRYSEHVMDDNSW 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,271
Number of Sequences: 27780
Number of extensions: 299225
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)