Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0184
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 29 4.0
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 29 4.0
At4g00020.1 68417.m00002 BRCA2 repeat-containing protein low sim... 28 7.1
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ... 27 9.3
At4g38090.2 68417.m05380 expressed protein contains Pfam PF01205... 27 9.3
At4g38090.1 68417.m05379 expressed protein contains Pfam PF01205... 27 9.3
At4g30510.2 68417.m04332 transport protein-related weak similari... 27 9.3
At4g30510.1 68417.m04331 transport protein-related weak similari... 27 9.3
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 27 9.3
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 329 TAICYPCEDLNGHDCSNYAKSSNDEQVWSSRFSSTKHH---SGGHY 457
T + +P DL D S Y K+ ND+ ++ + H+ GGHY
Sbjct: 811 TFVNFPVHDL---DLSKYVKNKNDQSYLYELYAVSNHYGGLGGGHY 853
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 329 TAICYPCEDLNGHDCSNYAKSSNDEQVWSSRFSSTKHH---SGGHY 457
T + +P DL D S Y K+ ND+ ++ + H+ GGHY
Sbjct: 811 TFVNFPVHDL---DLSKYVKNKNDQSYLYELYAVSNHYGGLGGGHY 853
>At4g00020.1 68417.m00002 BRCA2 repeat-containing protein low
similarity to SP|P51587 Breast cancer type 2
susceptibility protein {Homo sapiens}; contains Pfam
profile PF00634: BRCA2 repeat
Length = 765
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Frame = +2
Query: 350 EDLNGHDCSNYAKSSNDEQVWS-----SRFSST--KHHSG 448
+DLNG + N + SS+ + WS F +T KHHSG
Sbjct: 197 DDLNGFNHVNQSSSSSQQHGWSGLKTHEEFDATVVKHHSG 236
>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
similar to SP|Q01205 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +1
Query: 55 KVATGVPVKLGAGNIPVIXSSGGTIQIAGGTLAGQQVKTPV 177
K G+ K G I + +GG+ ++ G + G + TP+
Sbjct: 356 KTINGLAKKATEGTISIDEMAGGSFTVSNGGVYGSLISTPI 396
>At4g38090.2 68417.m05380 expressed protein contains Pfam PF01205:
Uncharacterized protein family UPF0029
Length = 189
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 267 GNAGIPVIIKKTGAGAQASNTPQFVTLVKT 356
G IPV++ +G + ASN+ F TL +T
Sbjct: 15 GGRRIPVLVAASGKRSMASNSGSFTTLKET 44
>At4g38090.1 68417.m05379 expressed protein contains Pfam PF01205:
Uncharacterized protein family UPF0029
Length = 234
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 267 GNAGIPVIIKKTGAGAQASNTPQFVTLVKT 356
G IPV++ +G + ASN+ F TL +T
Sbjct: 15 GGRRIPVLVAASGKRSMASNSGSFTTLKET 44
>At4g30510.2 68417.m04332 transport protein-related weak similarity
to Gsa12p [Pichia pastoris] GI:18307769; contains 1
WD-40 repeat (PF00400); similar to several hypothetical
proteins
Length = 261
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 303 GAGAQASNTPQFVTLVKTSTGM 368
GAG QAS +P+ + L KT+TG+
Sbjct: 25 GAGEQASLSPRRLCLFKTTTGL 46
>At4g30510.1 68417.m04331 transport protein-related weak similarity
to Gsa12p [Pichia pastoris] GI:18307769; contains 1
WD-40 repeat (PF00400); similar to several hypothetical
proteins
Length = 312
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 303 GAGAQASNTPQFVTLVKTSTGM 368
GAG QAS +P+ + L KT+TG+
Sbjct: 12 GAGEQASLSPRRLCLFKTTTGL 33
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 348 VKTSTGMTVATMPKVAMMNRSGAAVSQAQNITPGATIV 461
+K S G+ +AT K+ + A+V + Q++TP +V
Sbjct: 38 IKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVV 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,235,495
Number of Sequences: 28952
Number of extensions: 270178
Number of successful extensions: 623
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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