Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0183
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 153 2e-38
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 153 2e-38
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 152 4e-38
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 28 1.0
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 28 1.4
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.1
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 7.3
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.3
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 153 bits (372), Expect = 2e-38
Identities = 74/123 (60%), Positives = 88/123 (71%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRY
Sbjct: 90 ISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615
PDPLIKVND+I+L++ T KI FI V G TIV RE H F+I+
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLG-SFEII 208
Query: 616 HIQ 624
H++
Sbjct: 209 HVK 211
Score = 100 bits (240), Expect = 2e-22
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 49.2 bits (112), Expect = 5e-07
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ + I+ QRLIKVDGKVRTD T+P GFMDV + +
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEK 94
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 153 bits (372), Expect = 2e-38
Identities = 74/123 (60%), Positives = 88/123 (71%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRY
Sbjct: 90 ISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615
PDPLIKVND+I+L++ T KI FI V G TIV RE H F+I+
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLG-SFEII 208
Query: 616 HIQ 624
H++
Sbjct: 209 HVK 211
Score = 100 bits (240), Expect = 2e-22
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ + I+ QRLI+VDGKVRTD T+P GFMDV + +
Sbjct: 59 REVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEK 94
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 152 bits (369), Expect = 4e-38
Identities = 73/123 (59%), Positives = 88/123 (71%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRY
Sbjct: 90 ISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615
PDPLIKVND+I+L++ T KI FI V G TIV RE H F+I+
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLG-SFEII 208
Query: 616 HIQ 624
H++
Sbjct: 209 HVK 211
Score = 100 bits (240), Expect = 2e-22
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 48.8 bits (111), Expect = 7e-07
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
+ + I+ QRLIKVDGKVRTD T+P GFMDV
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFPTGFMDV 89
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 450 QSQRFHPVRHCNYEDYGLHQFES 518
++++ HPVRH YED FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +1
Query: 241 WIYGCVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK-RVATGPKNVPYLVTHD 417
W C +I + F + G + +I K LC V T PKN Y+V
Sbjct: 32 WCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASG 91
Query: 418 GR 423
GR
Sbjct: 92 GR 93
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 616 AQCRKEAGDVSRGTRWLPTRPKLRPPVI 533
+Q KE SRGT LP+RP RP V+
Sbjct: 106 SQPPKEPALPSRGTPSLPSRPGSRPSVL 133
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 251 DVSQLRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 364
++S+++ L+NCF+ S + D + LR L +K
Sbjct: 423 ELSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.3
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +2
Query: 125 DFPEESSEVCFDRKRILKIVKQRLIKVDGKV--RTDP--TYPAGFMDVSQLRRLMNCFV* 292
DFP + + + +KR I+K+ L+ VD + R + T P+ +DV + N +
Sbjct: 100 DFPSQEAALVRKKKRDALILKKYLLNVDPSLSFRAEGLFTLPSDDLDVYEFFGGENLTLF 159
Query: 293 SMMLRADSQSTVSPLRRLSTSCVKSSVWRPD 385
+ +R D Q + L +L+ C+ S+ + D
Sbjct: 160 N-QVRVDCQCYIHYLPKLAV-CILSNFFLQD 188
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 345 SLLRGDTVDCESALNIID*TKQ 280
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 259 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRTIR 432
S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H ++
Sbjct: 1721 SLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEMLK 1779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,793
Number of Sequences: 5004
Number of extensions: 63791
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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