Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0183
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 133 1e-31
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 129 2e-30
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 128 4e-30
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.81
11_06_0087 - 19919224-19922304 29 2.5
04_03_1015 - 21734381-21736534 29 2.5
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149... 29 3.3
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.3
08_01_1071 + 10948765-10949229 28 5.7
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.7
11_06_0179 + 20952070-20955228 28 7.5
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 28 7.5
08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029 27 9.9
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 133 bits (322), Expect = 1e-31
Identities = 64/123 (52%), Positives = 83/123 (67%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
VSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRY
Sbjct: 106 VSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRY 165
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615
PDPLIK ND+I++D+ T KI+DFI G V G I SRE+H + F+ +
Sbjct: 166 PDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVIKSREKH-KGSFETI 224
Query: 616 HIQ 624
H++
Sbjct: 225 HVE 227
Score = 101 bits (241), Expect = 7e-22
Identities = 43/55 (78%), Positives = 48/55 (87%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT E
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 76
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ ++ I+ QR + VDGKVRTD TYPAGFMDV + +
Sbjct: 75 REVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAK 110
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 129 bits (311), Expect = 2e-30
Identities = 60/123 (48%), Positives = 82/123 (66%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRY
Sbjct: 90 ISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615
PDPLIK ND+I++D+ T KI+DFI G V G I +RE+H + F+ +
Sbjct: 150 PDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKH-KGSFETI 208
Query: 616 HIQ 624
H++
Sbjct: 209 HVE 211
Score = 101 bits (243), Expect = 4e-22
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
+ ++ I+ QR + VDGKVRTD TYPAGFMDV
Sbjct: 59 REVISILMQRHVLVDGKVRTDKTYPAGFMDV 89
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 128 bits (309), Expect = 4e-30
Identities = 59/123 (47%), Positives = 82/123 (66%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRY
Sbjct: 90 ISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615
PDP+IK ND+I++D+ T KI+DFI G V G I +RE+H + F+ +
Sbjct: 150 PDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKH-KGSFETI 208
Query: 616 HIQ 624
H++
Sbjct: 209 HVE 211
Score = 101 bits (243), Expect = 4e-22
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
+ ++ I+ QR + VDGKVRTD TYPAGFMDV
Sbjct: 59 REVISILMQRHVLVDGKVRTDKTYPAGFMDV 89
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 135 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 34
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 383 DLRMFRTW*RMMAA-PSAIQTHLSKSTIPSS*TLQLRRL 496
DL R W +A PS HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +2
Query: 347 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 472
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>10_07_0015 +
11813465-11813479,11814342-11814422,11814842-11814951,
11815553-11815608,11816086-11816180,11817021-11817126,
11817261-11817577,11817666-11817848,11817976-11818173,
11819029-11819346,11819721-11819813
Length = 523
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 107 RVLAPGDFPEESSEVCFDRKRILKIVK 187
+VL G P+ESSEV D ILK+++
Sbjct: 468 KVLDEGSSPQESSEVTCDENAILKVME 494
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 148 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 20
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_01_1071 + 10948765-10949229
Length = 154
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 562 WATIVSRERHPRLPFDIVHIQR 627
WAT++ RHP+LP D + QR
Sbjct: 21 WATLMKSIRHPQLPKDKLFAQR 42
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 283 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 387
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>11_06_0179 + 20952070-20955228
Length = 1052
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 546 RNLGRVGNHRVPRETSPASFRHCAHSKDSTGDN 644
+N G + VP P+S R A K GDN
Sbjct: 396 KNFGTEDSFPVPNSAVPSSLRRSARRKQDAGDN 428
>03_05_1094 -
30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 624 LNVHNVERKPGMSLAGHDGC 565
L HN E KPG+S+ H C
Sbjct: 446 LQDHNEEEKPGLSMKSHGNC 465
>08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029
Length = 927
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 244 IYGCVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLV 408
I G V + ++L L YD++ HRI P+E + + + R+ G P V
Sbjct: 53 IQGPVQQQWVHQLQDLAYDIEDFIDGHRIGPQEPNHFMPRAARMIFGTDRRPQQV 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,676,185
Number of Sequences: 37544
Number of extensions: 459526
Number of successful extensions: 1386
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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