BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0183 (658 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 1e-33 SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10) 28 5.8 >SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 687 Score = 140 bits (338), Expect = 1e-33 Identities = 67/123 (54%), Positives = 84/123 (68%) Frame = +1 Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435 V+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV G K VPY+VTHD RTIRY Sbjct: 514 VTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRY 573 Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615 PDP IKVND++ +DI T K++D+I G G + RE+H FDIV Sbjct: 574 PDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAG-SFDIV 632 Query: 616 HIQ 624 H++ Sbjct: 633 HVK 635 Score = 114 bits (274), Expect = 7e-26 Identities = 50/60 (83%), Positives = 54/60 (90%) Frame = +3 Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182 PKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E K+ Sbjct: 429 PKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKI 488 Score = 57.2 bits (132), Expect = 1e-08 Identities = 25/31 (80%), Positives = 28/31 (90%) Frame = +2 Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256 + + KIVKQRLIK+DGKVRTD TYPAGFMDV Sbjct: 483 EEVKKIVKQRLIKIDGKVRTDTTYPAGFMDV 513 >SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 854 Score = 29.1 bits (62), Expect = 3.3 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = -3 Query: 539 RDHTQVPGLKLMKSIIFVVAMSNWMESLTLISG 441 RD+ ++ G +L K IIF++ + +++ S LISG Sbjct: 180 RDYLRIKGRRLQKGIIFILILKDYL-SYHLISG 211 >SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10) Length = 311 Score = 28.3 bits (60), Expect = 5.8 Identities = 14/56 (25%), Positives = 33/56 (58%) Frame = -3 Query: 635 RGVL*MCTMSKGSRGCLSRDTMVAHAPQVTASRDHTQVPGLKLMKSIIFVVAMSNW 468 +G+ M M+K +RG + ++H+P +T + +H++ + M++++ +V NW Sbjct: 148 QGLEVMHYMAKKTRGLQPK---MSHSPWITVNGEHSEFIQQQAMENLLQLVCTVNW 200 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,528,619 Number of Sequences: 59808 Number of extensions: 523275 Number of successful extensions: 1382 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1267 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1380 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1681430875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -