Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0183
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   123   1e-28
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.1  
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  123 bits (297), Expect = 1e-28
 Identities = 63/123 (51%), Positives = 77/123 (62%)
 Frame = +1

Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
           V+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRY
Sbjct: 89  VAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRY 148

Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615
           PDP +KVND+I  +I+T KI D +   PG           G    I  RER P    DI+
Sbjct: 149 PDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGAS-DII 207

Query: 616 HIQ 624
           HI+
Sbjct: 208 HIK 210



 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 44/60 (73%), Positives = 49/60 (81%)
 Frame = +3

Query: 3   PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
           PKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E+ K+
Sbjct: 4   PKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKI 63



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +2

Query: 176 KIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRRLMNCF 286
           KI+ QR+++VDGKVRT   +P GFMDV  + R    F
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 307 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 438
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical
           protein F22E10.1 protein.
          Length = 1318

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 624 LNVHNVERKPGMSLA--GHDGCPRAPSYGL 541
           LN  N+  KPG S+A  GH GC ++ S GL
Sbjct: 435 LNGLNLTVKPGTSVALVGHSGCGKSTSVGL 464


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 464  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 300
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 241 WIYGCVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 420
           ++YG V+   T   F    D      +HR    +   K+   K V +G K+VPYL     
Sbjct: 190 YLYGGVAFLVTTAFFAFFRDSA---QVHRNVSVKELEKISAGKTVTSGRKSVPYLAVCKN 246

Query: 421 RTI 429
           + I
Sbjct: 247 KVI 249


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 423 HHPLSRPTYQSQRFHPVRHCNYEDYGLH 506
           HH    PTY    F+P  H +Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical
           protein F22E10.2 protein.
          Length = 1324

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 624 LNVHNVERKPGMSLA--GHDGCPRAPSYGL 541
           LN  N+  +PG S+A  GH GC ++ S GL
Sbjct: 435 LNGLNLTVEPGTSVALVGHSGCGKSTSVGL 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,874,951
Number of Sequences: 27780
Number of extensions: 372946
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)