Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0183
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   135   3e-32
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             134   4e-32
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   134   4e-32
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.67 
At3g25740.1 68416.m03205 metallopeptidase M24 family protein sim...    28   4.8  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  135 bits (326), Expect = 3e-32
 Identities = 66/123 (53%), Positives = 83/123 (67%)
 Frame = +1

Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
           VSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRY
Sbjct: 90  VSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRY 149

Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615
           PDPLIK ND+I+LD+   KI++FI    G  V        G    I +RE+H +  F+ +
Sbjct: 150 PDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKH-KGSFETI 208

Query: 616 HIQ 624
           HIQ
Sbjct: 209 HIQ 211



 Score =  102 bits (244), Expect = 2e-22
 Identities = 44/55 (80%), Positives = 49/55 (89%)
 Frame = +3

Query: 6   KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
           KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 6   KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +2

Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
           + ++ I+ QR I+VDGKVRTD TYPAGFMDV
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYPAGFMDV 89


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  134 bits (325), Expect = 4e-32
 Identities = 66/123 (53%), Positives = 83/123 (67%)
 Frame = +1

Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
           VSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRY
Sbjct: 90  VSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRY 149

Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615
           PDPLIK ND+I+LD+   KI++FI    G  V        G    I +RE+H +  F+ +
Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKH-KGSFETI 208

Query: 616 HIQ 624
           HIQ
Sbjct: 209 HIQ 211



 Score =  102 bits (244), Expect = 2e-22
 Identities = 44/55 (80%), Positives = 49/55 (89%)
 Frame = +3

Query: 6   KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
           KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 6   KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +2

Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
           + ++ I+ QR I+VDGKVRTD TYPAGFMDV
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYPAGFMDV 89


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  134 bits (325), Expect = 4e-32
 Identities = 66/123 (53%), Positives = 83/123 (67%)
 Frame = +1

Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
           VSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRY
Sbjct: 90  VSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRY 149

Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWATIVSRERHPRLPFDIV 615
           PDPLIK ND+I+LD+   KI++FI    G  V        G    I +RE+H +  F+ +
Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKH-KGSFETI 208

Query: 616 HIQ 624
           HIQ
Sbjct: 209 HIQ 211



 Score =  102 bits (244), Expect = 2e-22
 Identities = 44/55 (80%), Positives = 49/55 (89%)
 Frame = +3

Query: 6   KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
           KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 6   KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +2

Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
           + ++ I+ QR I+VDGKVRTD TYPAGFMDV
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYPAGFMDV 89


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 115 KHSRNLWGPVDGLGAYTPPSLSNIHAL 35
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At3g25740.1 68416.m03205 metallopeptidase M24 family protein
           similar to SP|O33343 Methionine aminopeptidase (EC
           3.4.11.18) (Peptidase M) {Mycobacterium tuberculosis};
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 344

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = +1

Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFISLSPGTCV*SREAVTWGAWAT 570
           N+   + H   T+ + +PLI ++ +   ++         +L P   + + E VTW    T
Sbjct: 255 NMERFIGHGVGTVLHSEPLIYLHSNYDYELEYMIEGQTFTLEPILTIGTTEFVTWPDKWT 314

Query: 571 IVSRERHPRLPFD 609
           IV+ +  P   F+
Sbjct: 315 IVTADGGPAAQFE 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,125,200
Number of Sequences: 28952
Number of extensions: 353787
Number of successful extensions: 1001
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)