Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0182
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81482-4|CAB03958.1|  104|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z81482-4|CAB03958.1|  104|Caenorhabditis elegans Hypothetical
           protein C40H5.7 protein.
          Length = 104

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 634 LVTGFTTFFCPLIPVFLGLRCNLQF 560
           L+ G + +FC   P F+G +C  +F
Sbjct: 45  LLNGSSNYFCECPPAFIGFQCEYRF 69


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 132 VSQNTGTCPESSCACPETSCAC 197
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


>AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical
           protein M04F3.5 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 484 SLVLNLQLKGCGNSSQNCQTQASSFQ 561
           S  LNL   G GNSS N  T+ S +Q
Sbjct: 338 STYLNLMGNGAGNSSSNTITEMSQYQ 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,351,528
Number of Sequences: 27780
Number of extensions: 87165
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)