Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0181
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    29   0.69 
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    28   1.6  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    27   2.8  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   3.7  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   6.4  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   8.5  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.5  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 84  IVKSPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTV-RVSTAQSGAQIVLGSASEA 260
           +VKSP +   PS+S +I V ++    V R  +  ST   + RV+   +   I   S S +
Sbjct: 210 VVKSPGSNDKPSASPRISVRSLGNSSVVRPPTRTSTTRPLSRVNVTNASGSISKNSTSPS 269

Query: 261 PVR 269
            V+
Sbjct: 270 KVK 272


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = +3

Query: 72  QAKAIVKSPANPATPS-SSQQIKVAAVTPQGVTRIV-----SGVSTPGTVRVSTAQSGAQ 233
           Q  AI +S A   TP+ S+ QI  +   P  V  I      SG STP   RVS  + G  
Sbjct: 45  QNSAIPQSNALNTTPNESTSQIDSSPKIPSAVPHISTPNPSSGASTPNIKRVSDFKFGE- 103

Query: 234 IVLGSASEAPVRRVT 278
            +LG  S + V   T
Sbjct: 104 -ILGEGSYSTVLTAT 117


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 587 PSFTGTPVATFVCRFATPPCKGIPPAVLQEHYS 489
           PSFTG P +    +     C+  PP +++E  S
Sbjct: 4   PSFTGLPTSMLSVKMICSECREDPPNLVEEFSS 36


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 117 SSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVST 215
           S S     +  + +GVT  VSG +TP +VR ST
Sbjct: 360 SDSPMTPNSVYSNEGVTSSVSGNATPASVRQST 392


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 289 FHLYVTRRTGASEADPNTICAPD 221
           +H Y + R G S  DP   C PD
Sbjct: 9   YHSYYSMRGGTSIIDPRLKCLPD 31


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 93  SPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTAQSG 227
           S ++   PSSSQ I  ++ T   V    S  ST  +  VST  SG
Sbjct: 101 SSSDSFIPSSSQTISASSSTTDNVIVSSSISSTVSSTPVSTIYSG 145


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 584 SFTGTPVATFVCRFATPPC 528
           +FTG  + T +C+   PPC
Sbjct: 50  TFTGRQIYTSICKSRIPPC 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,803
Number of Sequences: 5004
Number of extensions: 64585
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)