Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0181
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0682 - 26253319-26253575,26254009-26254114 31 0.72
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 31 0.72
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 31 0.95
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 31 0.95
07_03_1636 + 28290642-28291574 31 1.3
03_01_0308 + 2431213-2432040 31 1.3
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 30 2.2
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 29 2.9
07_01_0313 + 2216498-2216953 29 5.1
12_02_0016 + 12350435-12350537,12351517-12351583,12351981-123520... 28 6.7
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197... 28 6.7
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 28 8.9
>11_06_0682 - 26253319-26253575,26254009-26254114
Length = 120
Score = 31.5 bits (68), Expect = 0.72
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 72 QAKAIVKSPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTAQSGAQI 236
+ +++ +P P TPSSS A TP+G + + V PG+ ++T GA +
Sbjct: 48 RTQSMPTTPTTPVTPSSSSPTTTATTTPRG-SNVWRSVFHPGS-NLATKSLGANL 100
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 31.5 bits (68), Expect = 0.72
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -3
Query: 468 APSFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 322
A S G + A+ F T +GV F ++V P+++ PAS G+L +L
Sbjct: 178 AMSLGGSYAALMAARFVTSVGVGFA-VVVAPVYAVEISPASSRGVLSSL 225
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 31.1 bits (67), Expect = 0.95
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 468 APSFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 322
A S + A+ F T +GV F ++V P+++ PAS G+L +L
Sbjct: 111 AMSLGATYAALMAARFVTSVGVGFS-LVVAPVYNAEISPASARGVLSSL 158
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 31.1 bits (67), Expect = 0.95
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 239 HNLCTRLCCR-DTYGSWCRD-ATYDSCHTLRRHRGH 138
H+L TRL R G CR+ AT D CH+LR R H
Sbjct: 117 HHLTTRLMKRFSRRGLRCRNIATQDCCHSLRDTRNH 152
>07_03_1636 + 28290642-28291574
Length = 310
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +3
Query: 72 QAKAIVKSPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTAQSGAQIVLGSA 251
Q + + K PA PATPS + VAA+ P V + VSTP + G A
Sbjct: 199 QTQPLAKPPA-PATPSRAGG-HVAALAPPAVAKADRHVSTPSPAKADWQMVGTPTATKGA 256
Query: 252 SE 257
S+
Sbjct: 257 SK 258
>03_01_0308 + 2431213-2432040
Length = 275
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +2
Query: 308 VPVKLSAGNMPVKLAGNAVPLKIGTTNIQGKLTPNSVQKVGQVTAGNLPLKLGAGNVKI 484
VP+ S G +P N +PL G + G L P QV G L LG G + +
Sbjct: 110 VPIPNSNGAIPTYNGNNGIPLDTGLSG-AGFLQPAKGASAAQVQLGPDGLSLGFGTITV 167
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 468 APSFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 322
A S + A+ F T +GV F +V P+++ PAS G+L +L
Sbjct: 113 AMSLGATYAALMAARFVTSVGVGFA-RVVAPVYNAEISPASTRGVLTSL 160
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 468 APSFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 322
A S + A+ F T +GV F ++V P+++ PAS G++ L
Sbjct: 114 AMSLGATYAALMAARFVTSVGVGFS-LVVAPVYNAEISPASARGVVSTL 161
>07_01_0313 + 2216498-2216953
Length = 151
Score = 28.7 bits (61), Expect = 5.1
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Frame = -3
Query: 525 GHSACCFTRTLLVPILTLPA------PSFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSG 364
GH+A T P +PA P+ PAVT P + V P M +P
Sbjct: 26 GHAARHLADTTEAPAAAIPAVPAMPKPTIPTIVPAVTLPPIPAVPKVTLPPMPAIPTVPA 85
Query: 363 TALPASLTGILPALNFTGTAPLPPVFTCT*RGVPAP 256
+P +PA+ P+P V T V P
Sbjct: 86 VTMPP--MPAVPAVPAVTLPPMPAVPTVPPNTVVVP 119
>12_02_0016 +
12350435-12350537,12351517-12351583,12351981-12352047,
12352301-12352381,12352416-12352445,12352625-12352665,
12353083-12353212,12354096-12354327,12355244-12355332
Length = 279
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 611 LSQECYRRPSFTGTPVATFVCRFATPPCKGIPPAVLQEH 495
+ Q+ +R PS+ T + AT P +PP ++ H
Sbjct: 167 IDQDLFRAPSWISRHARTSIQIDATSPISSVPPPTIRHH 205
>07_03_0910 -
22519006-22519159,22519300-22519355,22519433-22519702,
22519808-22519986,22520146-22520374,22520985-22521180,
22521728-22521818,22521921-22521975,22522812-22522902,
22523366-22523424,22524000-22524050
Length = 476
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +2
Query: 266 TPRYVQVKTGGSGAVPVKLSAGNMPVKLAGNAVPLK-IGTTNIQGKLTPNSVQKVGQVTA 442
TP+ + + + + L AGN P + GNA L G+ G L S +
Sbjct: 335 TPQQLALLSQQQALLMAALKAGNAPQMIPGNASLLNGNGSNPANGGLPSQSWTNLAYQNP 394
Query: 443 GNLPLKLGAGNVKIGTSN 496
G P+ G K+ +N
Sbjct: 395 GLAPVAAQNGATKVANNN 412
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 87 VKSPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTP 194
+KS ++ + PS+S+ + V +V P V +SG S P
Sbjct: 127 LKSLSDGSAPSASEDLIVPSVQPHPVANPISGGSNP 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,551,643
Number of Sequences: 37544
Number of extensions: 515351
Number of successful extensions: 1371
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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