Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0181
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10841| Best HMM Match : C1_1 (HMM E-Value=3.2) 31 1.3
SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88) 29 5.2
SB_4313| Best HMM Match : Zip (HMM E-Value=1.7e-39) 29 5.2
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_14245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5) 28 6.9
SB_38299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08) 28 9.1
>SB_10841| Best HMM Match : C1_1 (HMM E-Value=3.2)
Length = 544
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -2
Query: 361 CITCKFDRHITSTQLHRNSTTPACFHLYVTRRTGASEADPNTICAPDC 218
CIT + +H + AC HL R + P+T+C +C
Sbjct: 468 CITVCIQWRVIIYYVHYGRHSMACHHLLCALRDAYNGVSPSTVCITEC 515
>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1125
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -3
Query: 540 NTTL*GHSAC---CFTRTLLVPILTLPAPSFKGRFPAVTCPTFCTLLGVNF 397
N+T G AC CF ++ V +L+ P P P CP L V F
Sbjct: 732 NSTFGGEMACVWCCFPFSIRVSLLSTPCPIKAALSPVTPCPIKAALSPVYF 782
>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
Length = 841
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -1
Query: 218 CCRDTYGSWCRDATYDSCH--TLRRHR 144
CC+D C++ YD C TLR+++
Sbjct: 234 CCKDVTNDCCKEVKYDCCKDLTLRKYK 260
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -1
Query: 218 CCRDTYGSWCRDATYDSCH--TLRRHR 144
CC+D C++ YD C TLR+++
Sbjct: 389 CCKDVTNDCCKEVKYDCCKDLTLRKYK 415
>SB_4313| Best HMM Match : Zip (HMM E-Value=1.7e-39)
Length = 318
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 2 TQTVCSSCHRKSH--AGHSNYETVIP 73
++T C SCH+K+ GHS+ ET P
Sbjct: 78 SRTSCPSCHKKARFFHGHSHVETTAP 103
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 108 ATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTAQSGA-QIVLGSASEAPVRR 272
+TP + + + V P G +R+ SG+ TV +S A Q+ +S++ V +
Sbjct: 1703 STPERDETVVIVLVNPTGGSRVASGLGNNLTVIISANDGVAGQVGFSQSSQSVVAK 1758
>SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = -2
Query: 361 CITCKFDRHITSTQLHRNSTTPACFHLYVTRRTGASEADPNTICAPDCAVETRTV 197
CIT +T +H AC HL R + +T+C C ++ R +
Sbjct: 55 CITECIQWRVTIFYVHYGMHLTACHHLLFALRDAFNSVSSSTVCITGC-IQCRVI 108
>SB_14245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -3
Query: 510 CFTRTLLVPILTLPAPSFKGR----FPAVTCPTFCTLLGVNFP*MLVVPIFSGTA 358
C +L+PIL P+P F CP++C L V P +LV P TA
Sbjct: 24 CVLHPVLLPILMCPSPRATAHLDVSFTPCYCPSWCVLHPVLLP-ILVCPSPRATA 77
>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
Length = 331
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = -2
Query: 361 CITCKFDRHITSTQLHRNSTTPACFHLYVTRRTGASEADPNTICAPDCAVETRTV 197
CIT +T +H AC HL R + +T+C C ++ R +
Sbjct: 55 CITECIQWRVTIFYVHYGMHLTACHHLLFALRDAFNSVSSSTVCITGC-IQCRVI 108
>SB_38299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 301 TPACFHLYVTRRTGASEADPNTICA 227
TP C HLY T A P +CA
Sbjct: 6 TPMCAHLYRTVELNAVSTSPKPVCA 30
>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
Length = 317
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 196 EPYVSLQHSLVHRLC*DRPLRRRYAALRTSENRR 297
E Y SL + HR +RP YA LR SEN +
Sbjct: 113 EEYYSLFVGVNHRCHLERPFMMSYAYLRRSENAK 146
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,979,318
Number of Sequences: 59808
Number of extensions: 555633
Number of successful extensions: 1775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -