Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0181
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40943-5|AAK39235.2|  279|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal p...    28   7.9  
AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.      28   7.9  
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    28   7.9  
AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U40943-5|AAK39235.2|  279|Caenorhabditis elegans Hypothetical
           protein F47F2.3 protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/60 (30%), Positives = 21/60 (35%)
 Frame = -2

Query: 301 TPACFHLYVTRRTGASEADPNTICAPDCAVETRTVPGVETPLTILVTPCGVTAATLIC*E 122
           TP C   Y      A       +C PDC  E  T P +  P  I    C   A  + C E
Sbjct: 116 TPQCLDAYSIAEHNAKPKVCKAVCMPDCTEECITAPPLMVP-CIFDNVCHCPAGYVRCSE 174


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/65 (29%), Positives = 22/65 (33%)
 Frame = -2

Query: 331 TSTQLHRNSTTPACFHLYVTRRTGASEADPNTICAPDCAVETRTVPGVETPLTILVTPCG 152
           T+T     +TTP       T  T  +     T   P    ET T P  ET  T   T   
Sbjct: 67  TTTTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPT 126

Query: 151 VTAAT 137
            T  T
Sbjct: 127 TTTTT 131



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/65 (30%), Positives = 21/65 (32%)
 Frame = -2

Query: 331 TSTQLHRNSTTPACFHLYVTRRTGASEADPNTICAPDCAVETRTVPGVETPLTILVTPCG 152
           T T     +TTP       T  T        T   P    ET T P   TP T   TP  
Sbjct: 77  TPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTP--TTETTTTPTTTTPTTTTTTPTT 134

Query: 151 VTAAT 137
            T  T
Sbjct: 135 TTTET 139


>U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal
           protein 7 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 215 CRDTYGSWCRDATYDSCHTLRRHRGHFDL 129
           CR+ Y S  R A  D CHT+      FD+
Sbjct: 71  CRNIYKSCDRWAVEDKCHTILTQTNFFDV 99


>AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 215 CRDTYGSWCRDATYDSCHTLRRHRGHFDL 129
           CR+ Y S  R A  D CHT+      FD+
Sbjct: 71  CRNIYKSCDRWAVEDKCHTILTQTNFFDV 99


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = -3

Query: 525 GHSACCFTRTLLVPILTLPAPSFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPAS 346
           G  A   +  L     T PAP+  G F + T PT  +           VP+F  T   AS
Sbjct: 34  GAPAAAMSSGLFGASQTAPAPASAGLFGSTTAPTPASTSS--------VPLFGSTTTTAS 85

Query: 345 LT-GILPALNFTGTAPLP 295
            + G+  A   T  AP P
Sbjct: 86  PSGGLFGAKTATTAAPAP 103


>AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical
           protein W03F9.10 protein.
          Length = 602

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 147 VTPQGVTRIVSGVSTPGTVRVSTAQSGAQIVLGSASEA 260
           +TP G+T  ++G+ TP T+ +   +  +  VLG+ + A
Sbjct: 446 ITPSGMTTGITGIETPDTIELRKGKESS--VLGTDTPA 481


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,852
Number of Sequences: 27780
Number of extensions: 398687
Number of successful extensions: 1256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)