Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0181
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20570.1 68415.m02402 golden2-like transcription factor (GLK1...    34   0.086
At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containi...    30   1.4  
At4g21326.1 68417.m03081 subtilase family protein contains simil...    30   1.8  
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    30   1.8  
At5g51210.1 68418.m06350 glycine-rich protein / oleosin                27   9.8  
At5g03640.1 68418.m00323 protein kinase family protein contains ...    27   9.8  

>At2g20570.1 68415.m02402 golden2-like transcription factor (GLK1)
           identical to golden2-like transcription factor
           GI:13311003 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00249 Myb-like DNA-binding domain
          Length = 420

 Score = 34.3 bits (75), Expect = 0.086
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -1

Query: 623 P*XWLSQECYRRPSFTGTP--VATFVCRFATPPCKGIPPAVLQEHYSYQ 483
           P  W+S   Y  P   GT   + T   RF  PP  GIP A+   H  Y+
Sbjct: 305 PPFWVSDSPYWHPMHNGTTPYLPTVATRFRAPPVAGIPHALPPHHTMYK 353


>At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 453

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = +2

Query: 269 PRYVQVKTGGSGAVPVKLSAGNMPVKLAGNAVPLKIGTTNIQGKLTPNSVQKVGQVTAGN 448
           PR VQ   GG GA  +  + GN  + + G  V + +       K     VQ     T   
Sbjct: 220 PRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWE-NKKEEEQMVQITRDETLSR 278

Query: 449 LPLKLGAGNV 478
           LPL+L    V
Sbjct: 279 LPLRLSTNRV 288


>At4g21326.1 68417.m03081 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 690

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 584 SFTGTPVATFVCRFATPPCKGIPPAVLQ 501
           +  G P+AT VC F++    G+ PA+LQ
Sbjct: 418 TLVGRPIATQVCGFSSRGPNGLSPAILQ 445


>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 12/151 (7%)
 Frame = -2

Query: 544 LQHHPVRAFRLLFYKNITRTNLDITGTKFQG*ISSSDLSYFLHTVGSQFSLNVSSTNL*W 365
           +QHHP+    L+  K+     L + G   +G  + S  +   H+ G  +S NV   +   
Sbjct: 456 IQHHPLHKHPLILNKSDPSLQLYVDGYSVEGMFACS--ACRRHSTGFVYSCNVEFCDFQV 513

Query: 364 DCITCKFDRHITSTQLHRNSTT-PACFHLYVTRRTGASEADPN-----TICAPDCAVETR 203
           D + C F   +  T +H +    P   +L      G S A         IC     VE  
Sbjct: 514 D-VKCAF---LPDTSVHESHPNHPIYINLTKGACMGCSNACSRKYLECLICDSFLGVECA 569

Query: 202 TVPGV------ETPLTILVTPCGVTAATLIC 128
           T+P V        PLT+     G T+    C
Sbjct: 570 TLPSVAHYKHDSHPLTLCYGEKGTTSGQYWC 600


>At5g51210.1 68418.m06350 glycine-rich protein / oleosin 
          Length = 141

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 84  IVKSPANPATPSSSQQIKVA-AVTPQGVTRIVSGVSTPGTVRVSTAQSGAQIV 239
           I +     A P + Q +K A AVT  G   ++SG++  GTV   T  +   ++
Sbjct: 12  ISRDSTQEAHPKARQMVKAATAVTAGGSLLVLSGLTLAGTVIALTVATPLLVI 64


>At5g03640.1 68418.m00323 protein kinase family protein contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 926

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
 Frame = +3

Query: 87  VKSPANPATPSSSQQIKVAAVTPQGVTR---IVSGVSTPGTVRVSTAQSGAQIVLGSASE 257
           +KSPANPA P S  +      T +   R   +     T  T R+  + S    V GS   
Sbjct: 97  LKSPANPAGPRSPSKRNAEPATLKQALRDLCVTKASETAATKRIPKSTSTGGSVYGSVLV 156

Query: 258 AP 263
            P
Sbjct: 157 EP 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,450
Number of Sequences: 28952
Number of extensions: 368005
Number of successful extensions: 899
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)