Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0180
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 30 0.25
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 28 0.99
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.7
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 4.0
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 26 4.0
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc... 26 5.3
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 26 5.3
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 26 5.3
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 25 9.2
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 9.2
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 9.2
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 508 PRKHGRGRSGASALEHALKLESDVTNSIREVIKNLREHF 624
P+KHGRG G SAL A + N +R+V + +HF
Sbjct: 174 PKKHGRG--GQSALRFARLRDEKRHNYVRKVAEGAVQHF 210
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 28.3 bits (60), Expect = 0.99
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 448 LPAHEGKADRLRKPTSSRTGPRKHGRGRSGASALEH 555
+P++ K ++RKP + RK GR S LEH
Sbjct: 75 IPSYRRKRRKVRKPEIVKPTLRKRGRKPKNISTLEH 110
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 473 TGSVNRPHHVQGPANTVVGEAAHQPSSTPSSWRVTSPTASGRSSRTCESTFND 631
T + N G AN G + SS PSS + SP+ + S++ + N+
Sbjct: 314 TSAYNPAPPAYGMANPAYGSTGIRSSSIPSSGSIRSPSLTTTSAQATTNATNN 366
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 493 SSRTGPRKHGRGRSGASALEHALKLESDVTNSIREVIKNLREHFQRLPP 639
SS + P R G S + + TN++R +N+R QRL P
Sbjct: 63 SSPSVPTSQSRVTQGQSLGNTQISNPTSKTNNVRAKARNIRNPSQRLRP 111
>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
27a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +1
Query: 448 LPAHEGKADRLRKPTSSRTGP----RKHGRGRSGASALEH 555
+P H K +LR S+ G RKH GR A L+H
Sbjct: 1 MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQH 40
>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 148
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +1
Query: 448 LPAHEGKADRLRKPTSSRTGP----RKHGRGRSGASALEH 555
+P H K +LR S+ G RKH GR A L+H
Sbjct: 1 MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQH 40
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 620 CSRKFLMTSRMLLVTSLSSLRACSRADAPLL 528
C R F + ++ +++S R C ADAP+L
Sbjct: 275 CQRYFQEGADEVVFLNITSFRNCPMADAPML 305
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 458 MRGKLTGSVNRPHHVQGPANTVVGEAAHQPSSTPSSWRVTSPTASGRSS 604
+R +L +VN+ +QGPA+ E PS + S V + GR S
Sbjct: 430 LRVELLRAVNKKREMQGPAHPRYSEEVQSPSRSRYSEEV-QRVSEGRLS 477
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 5 HTRIGLIYLNFLRIISRLLRQCV*RLDLYN 94
H RI I L F+R+ S++ R CV +++Y+
Sbjct: 327 HARIKNIEL-FIRLYSQMYRHCVPIIEIYD 355
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 174 NSPHLNFSYNHRFFDDTQKNMR 109
+SP+++F+Y+ F D QK +R
Sbjct: 95 SSPNMDFTYSINSFGDYQKQLR 116
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 443 IDYLLMRGKLTGSVNRPHHVQGPANT 520
I+ + G + G + PHH Q P NT
Sbjct: 688 IEPFTILGAVAGLIPYPHHNQSPRNT 713
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,462
Number of Sequences: 5004
Number of extensions: 44359
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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