Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0180
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 30 1.3
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 30 1.8
11_06_0476 + 24044255-24044431,24046902-24046958,24047095-240471... 29 3.1
03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700 29 3.1
02_04_0551 + 23801464-23801802 29 3.1
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 29 4.1
10_01_0244 + 2549102-2549158,2549205-2549334,2549422-2549559,255... 28 5.4
06_03_0020 + 15515768-15517696 28 5.4
03_03_0101 - 14431327-14432390,14432599-14432731 28 5.4
01_01_0992 + 7855491-7856236,7856334-7856337 28 5.4
07_03_0574 - 19629875-19631032 28 7.2
06_03_1115 - 27725583-27725864,27726189-27726251,27726345-27727214 28 7.2
11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832 27 9.5
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 27 9.5
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 602 MTSRMLLVTSLSSLRACSRADAPLLPRPC 516
MTSR+L+ +S SS A + A P +P PC
Sbjct: 1 MTSRVLVSSSSSSSSAAAAAFLPRIPNPC 29
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 398 FFDAATEEREHATKLIDYLLMRG 466
F +++ EER+HA KLI Y MRG
Sbjct: 162 FKESSDEERDHAEKLIKYQNMRG 184
>11_06_0476 +
24044255-24044431,24046902-24046958,24047095-24047140,
24047195-24047310
Length = 131
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = +3
Query: 234 RQPRHHQDEWLTMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 413
+ P+H + + E T Y M +QE + Y+ Y+ I P Y +
Sbjct: 29 QMPQHEKKRYFG-EDTIYKMYNNPLQERSRKKLVYIFWDRYYLIGNEQHPDKVDYPIFII 87
Query: 414 LKNA---STRPSSLTT 452
LK T P+S T
Sbjct: 88 LKKVLEDETPPNSTWT 103
>03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700
Length = 813
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -2
Query: 560 RACSRADAPLLPRP--CLRGPVRDEVGLRSLSAFPS*AGSQ*AWSR-ARVLQSQHRRIXR 390
RA + P LP C GPV D GL + F AGS W + L+ +H + R
Sbjct: 36 RAAAGGRPPPLPSSPLCSGGPVPDHHGLLRVVEFKGWAGSPGLWRQWVDRLRPRHEPLWR 95
Query: 389 EAGAVHRI 366
G + I
Sbjct: 96 SVGILDAI 103
>02_04_0551 + 23801464-23801802
Length = 112
Score = 29.1 bits (62), Expect = 3.1
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 301 NRSRRKWPRQSST*PWGLTSRSIR*TAPASRXILRCCD*RTRARDQAH*LPA--HEGKAD 474
+RSRR W R+ PW R R A R C + R D PA G A
Sbjct: 33 SRSRRHWRRRREPRPW---RRRQRGAAGGGRTWTTCGEVEQRRWDGNGEFPALVDSGCAY 89
Query: 475 RLR-KPTSS-RTGPR 513
R R +PT++ +TGPR
Sbjct: 90 RARIRPTNNHKTGPR 104
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 282 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 398
C + +QI E AS Y ++ AYF D V GFA +
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKF 129
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 398 FFDAATEEREHATKLIDYLLMRG 466
F +++ EER+HA KL+ Y MRG
Sbjct: 130 FKESSDEERDHAEKLMKYQNMRG 152
>10_01_0244 +
2549102-2549158,2549205-2549334,2549422-2549559,
2550078-2550205,2550346-2550396
Length = 167
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 494 HHVQGPANTVVGEAAHQPSSTPSSWR 571
HH Q PA+T+V + +STP ++R
Sbjct: 19 HHQQNPASTIVAIDKNLDTSTPDTYR 44
>06_03_0020 + 15515768-15517696
Length = 642
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 341 SHGGLLLDRYGEPPRLREXFFDAATEEREHATKLIDYLLMRGKLTGSVNRPHHVQGPANT 520
SH GL+ D + + + F EREH ++D L GKL +V H + ++
Sbjct: 382 SHAGLVEDGWYYFSSMEKLF--GIQPEREHCNCMVDLLGRAGKLDDAVKFIHEMNFQPDS 439
Query: 521 VV 526
V+
Sbjct: 440 VI 441
>03_03_0101 - 14431327-14432390,14432599-14432731
Length = 398
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 524 VGEAAHQPSSTPSSWRVTSPTASG--RSSRTCESTFND 631
+ A H+P + SS T+ TA+ RS+ TC + F+D
Sbjct: 154 IDPATHKPLAADSSATPTNTTAAAASRSTATCRAVFSD 191
>01_01_0992 + 7855491-7856236,7856334-7856337
Length = 249
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 491 PHHVQGPA-NTVVGEAAHQPSSTPSSWRVTSPTAS 592
PHHVQ PA TV G AH + V P A+
Sbjct: 189 PHHVQAPATQTVTGFVAHAQDDRYRAVSVCPPAAN 223
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 351 PPWLSTGLTRPLPPGXXXXXXXXXSAPW*ATHPDGDG-ADVTLCS 220
PP+ G+ RPLP + W T P DG A V CS
Sbjct: 164 PPYADDGIGRPLPGSRVTALAVVGAGIWTTTAPAEDGVASVRPCS 208
>06_03_1115 - 27725583-27725864,27726189-27726251,27726345-27727214
Length = 404
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +2
Query: 407 AATEEREHATKLIDYLLMRGKLTGSVNRPHHVQGPANTVVGEAAHQPSSTPSSWRVTSPT 586
AAT E + ++ +L RGK + + G A +V E H+ + + + P+
Sbjct: 321 AATAEAAMTERSVESVLFRGKKVMAQTNGERLDGVAEQLVRE-HHRRMESKAPVVLIKPS 379
Query: 587 ASGRSSRTCEST 622
A+ R+S + ST
Sbjct: 380 ATPRTSSSSAST 391
>11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832
Length = 165
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +2
Query: 236 SAPSPSG*-VAHHGADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGE 376
SAP PSG HGA DP R + HGG + +G+
Sbjct: 51 SAPPPSGHRTPPHGAGSSTPQRNKDPASRPRSQSAVGHGGGSVPAWGQ 98
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 323 GHFLLDLFPHHVVASLLHGEPLIL 252
G++++D F H + + H EPLIL
Sbjct: 250 GYYVVDRFVGHGIGPIWHSEPLIL 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,803,454
Number of Sequences: 37544
Number of extensions: 359188
Number of successful extensions: 1144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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