Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0180
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012) 33 0.20
SB_20408| Best HMM Match : rve (HMM E-Value=0.0034) 33 0.26
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011) 31 1.0
SB_59335| Best HMM Match : rve (HMM E-Value=0.0065) 30 1.4
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_7583| Best HMM Match : PT (HMM E-Value=6.1) 29 2.4
SB_50440| Best HMM Match : SOUL (HMM E-Value=1.7) 29 3.2
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) 29 4.2
SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31) 29 4.2
SB_8696| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 29 4.2
SB_17628| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-06) 28 5.6
SB_47692| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4) 28 5.6
SB_30089| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4) 28 5.6
SB_50296| Best HMM Match : TP2 (HMM E-Value=9.8) 28 7.4
SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32) 28 7.4
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0) 28 7.4
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35) 28 7.4
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_364| Best HMM Match : Tim17 (HMM E-Value=0.45) 28 7.4
SB_44359| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 27 9.7
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 276 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 398
+ C + KQI E+ AS YL+M +F D V PGF Y
Sbjct: 197 EECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKY 237
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 380 PRLREXFFDAATEEREHATKLIDYLLMRG 466
P + F A+ EEREHA KL+ + RG
Sbjct: 232 PGFHKYFLKASHEEREHAEKLMKFQNERG 260
>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
Length = 126
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 294 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGF 389
+ KQI +E+ A YL+M +F D +N PGF
Sbjct: 38 INKQINKELYAHYTYLSMAFHFDRDDINLPGF 69
>SB_20408| Best HMM Match : rve (HMM E-Value=0.0034)
Length = 887
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 464 GKLTGSVNRPHHVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
G+ GS + HH+ P +AAH+P+ TPS+ R+TSP
Sbjct: 316 GEPQGSTSA-HHLAEPDKQAAEQAAHEPARTPSALAERITSP 356
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 380 PRLREXFFDAATEEREHATKLIDYLLMRG 466
P + F +A+ EEREHA KL + L RG
Sbjct: 179 PGFHKYFMEASHEEREHAEKLAKFQLQRG 207
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 294 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 398
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 150 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 184
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 276 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGF 389
+ C + KQI E+ AS Y +M YF + V+ PGF
Sbjct: 10 EECEAGINKQINLELYASYVYTSMACYFDREDVHLPGF 47
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 294 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 398
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 135 VNKQINLELYASYVYMSMAYHFDRDDVALPGFHKY 169
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 380 PRLREXFFDAATEEREHATKLIDYLLMRG 466
P + F A+ EEREHA KL + L RG
Sbjct: 164 PGFHKYFMKASHEEREHAEKLAKFQLQRG 192
>SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 294 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 398
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 18 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 52
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 380 PRLREXFFDAATEEREHATKLIDYLLMRG 466
P + F A+ EEREHA KL + L RG
Sbjct: 47 PGFHKYFIKASHEEREHAEKLAKFQLQRG 75
>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
Length = 1178
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 479 SVNRPHHVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
S RP+ P +AAH+P+ TPS+ R+TSP
Sbjct: 583 SAQRPYGSAEPDKQAAEQAAHEPARTPSALAERITSP 619
>SB_59335| Best HMM Match : rve (HMM E-Value=0.0065)
Length = 1020
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 479 SVNRPHHVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
S RP+ P +AAH+P+ TPS+ R+TSP
Sbjct: 533 SAQRPYGSAEPDKQAAEQAAHKPARTPSALAERITSP 569
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 494 HHVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
H++ P +AAH+P+ TPS+ R+TSP
Sbjct: 1544 HYLAEPDKQAAEQAAHEPARTPSALAERITSP 1575
>SB_7583| Best HMM Match : PT (HMM E-Value=6.1)
Length = 501
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 497 HVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
H+ P +AAH+P+ TPS + R+TSP
Sbjct: 12 HLAEPDKQAAEQAAHEPARTPSPYAERITSP 42
>SB_50440| Best HMM Match : SOUL (HMM E-Value=1.7)
Length = 437
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 452 LLMRGKLTGSVNRPHHVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
L +R + S RP+ P + AH+P+ TPS+ R+TSP
Sbjct: 122 LSLRCGRSTSAQRPYGSAEPDKQAAEQTAHEPALTPSALVERITSP 167
>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1485
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 497 HVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
H+ P +AAH+P+ TPS+ R+TSP
Sbjct: 903 HLAEPDKQAAEQAAHEPARTPSALAERITSP 933
>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 497 HVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
H+ P +AAH+P+ TPS+ R+TSP
Sbjct: 673 HLAEPDEQAAEQAAHEPARTPSALAERITSP 703
>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
Length = 1081
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 497 HVQGPANTVVGEAAHQPSSTPSSWR 571
H+ P +AAH+P+ TP WR
Sbjct: 636 HLAEPDKQAAEQAAHEPARTPRRWR 660
>SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31)
Length = 635
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 497 HVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
H+ P +AAH+P+ TPS+ R+TSP
Sbjct: 523 HLAEPDKQAAEQAAHEPARTPSALAERITSP 553
>SB_8696| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 1152
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 497 HVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
H+ P +AAH+P+ TPS+ R+TSP
Sbjct: 757 HLAEPDKQAAEQAAHEPARTPSALAERITSP 787
>SB_17628| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-06)
Length = 260
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = +2
Query: 560 SSWR-VTSPTASGRSSRTC 613
+SWR +TSP AS SSRTC
Sbjct: 16 NSWRGLTSPMASNSSSRTC 34
>SB_47692| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)
Length = 162
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 509 PANTVVGEAAHQPSSTPSSWRVTSPTASGRSS-RTCE 616
PA+ V A +P S P WR+ + T G SS R C+
Sbjct: 67 PASQSVSRATPRPYSAP-KWRLNTSTEQGESSCRLCD 102
>SB_30089| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)
Length = 119
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 509 PANTVVGEAAHQPSSTPSSWRVTSPTASGRSS-RTCE 616
PA+ V A +P S P WR+ + T G SS R C+
Sbjct: 24 PASQSVSRATPRPYSAP-KWRLNTSTEQGESSCRLCD 59
>SB_50296| Best HMM Match : TP2 (HMM E-Value=9.8)
Length = 278
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 479 SVNRPHHVQGPANTVVGEAAHQPSSTPSSW--RVTSP 583
S RP+ P + AH+P+ TPS+ ++TSP
Sbjct: 149 SAQRPYGSAEPDKQAAEQTAHEPARTPSALVEKITSP 185
>SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)
Length = 898
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 533 AAHQPSSTPSSWRVTSPTASGRSSR 607
+A+Q SSTP++ RV+ T SGR R
Sbjct: 543 SANQESSTPANTRVSQTTRSGRIVR 567
>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1230
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 314 GSGRVNPV--LSHGGLLLDRYGEPPRLREXFFDAATEERE 427
GSG+ + L GGL+ D+YG PR + F A E ++
Sbjct: 672 GSGKTYTIGGLDTGGLMDDQYGIIPRAVKQIFQAFEESKQ 711
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 201 SNESEDSKENSPHLNFSYNHRFFDDT 124
+ ES KEN PH + N R +D+T
Sbjct: 413 AEESTSDKENVPHCSHGNNERCYDNT 438
>SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)
Length = 806
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 530 EAAHQPSSTPSSW--RVTSPTASGRSSR 607
+ AH+P+STPS+ R+TSP R+ R
Sbjct: 633 KTAHEPTSTPSTLVERITSPEPPARAYR 660
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 509 PANTVVGEAAHQPSSTPSSWRVTSPTASGRSS 604
P+N V +AA PS S W +PT++ +S
Sbjct: 144 PSNKTVKQAAQTPSKPSSLWDAPTPTSAPPAS 175
>SB_364| Best HMM Match : Tim17 (HMM E-Value=0.45)
Length = 437
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +2
Query: 509 PANTVVGEAAHQPSSTPSSW--RVTSP 583
PA+ EAAH+P+ TPS+ R+TSP
Sbjct: 22 PADEHHQEAAHEPARTPSALVERITSP 48
>SB_44359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 479 SVNRPHHVQGPANTVVGEAAHQPSSTPSSWRVTSPTASGRS---SRTCESTFNDYH 637
S R H + NT+ G A H + + +R T GRS SRT + F D H
Sbjct: 203 SGTRTSHFKDAHNTLQGRAEHTSWTRTTHFRDAHFTLQGRSQHTSRTRTTHFRDAH 258
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 581 VTSLSSLRACSRADAPLLPRPCLRGPVRDE 492
VTS++ + R+D RPC+RG D+
Sbjct: 1636 VTSINGINTGCRSDDACAVRPCMRGQCSDD 1665
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 293 DEETDPGGSGRVNPVLSHGGLLLDRYGEP 379
D DPGG R++ + HGG +DR G P
Sbjct: 226 DRPMDPGGP-RMDHPMGHGGPPMDRGGPP 253
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,570,685
Number of Sequences: 59808
Number of extensions: 378760
Number of successful extensions: 1115
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -