Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0180
         (639 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB195679-1|BAD72979.1|  660|Homo sapiens Golgi-localized syntaph...    34   0.37 
AB195677-1|BAD72977.1|  662|Homo sapiens Golgi-localized syntaph...    34   0.37 
AB195676-1|BAD72976.1|  662|Homo sapiens Golgi-localized syntaph...    34   0.37 
AK024452-1|BAB15742.1| 1051|Homo sapiens FLJ00044 protein protein.     30   8.0  
AF274934-1|AAK07513.1|   82|Homo sapiens PNAS-9 protein.               30   8.0  

>AB195679-1|BAD72979.1|  660|Homo sapiens Golgi-localized
           syntaphilin-related proten C protein.
          Length = 660

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = +2

Query: 419 EREHATKLIDYLLMRGKLTGSVNRPHHVQGPANTVVGEAAHQPSSTPSSWRVTSPTASGR 598
           E+EH  +  D  + R ++   + RPH  Q      V  A+  P S   S R  +P++SGR
Sbjct: 5   EKEHRVQHHDKEISRSRIPRLILRPHMPQ--QQHKVSPASESPFSEEES-REFNPSSSGR 61

Query: 599 SSRTCES 619
           S+RT  S
Sbjct: 62  SARTVSS 68


>AB195677-1|BAD72977.1|  662|Homo sapiens Golgi-localized
           syntaphilin-related proten A protein.
          Length = 662

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +2

Query: 416 EEREHATKLIDYLLMRGKLTGSVNRPHHVQGPANTVVGEAAHQPSSTPSSWRVTSPTASG 595
           E +EH  +  D  + R ++   + RPH  Q      V  A+  P S   S R  +P++SG
Sbjct: 6   ESKEHRVQHHDKEISRSRIPRLILRPHMPQ--QQHKVSPASESPFSEEES-REFNPSSSG 62

Query: 596 RSSRTCES 619
           RS+RT  S
Sbjct: 63  RSARTVSS 70


>AB195676-1|BAD72976.1|  662|Homo sapiens Golgi-localized
           syntaphilin-related proten A protein.
          Length = 662

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +2

Query: 416 EEREHATKLIDYLLMRGKLTGSVNRPHHVQGPANTVVGEAAHQPSSTPSSWRVTSPTASG 595
           E +EH  +  D  + R ++   + RPH  Q      V  A+  P S   S R  +P++SG
Sbjct: 6   ESKEHRVQHHDKEISRSRIPRLILRPHMPQ--QQHKVSPASESPFSEEES-REFNPSSSG 62

Query: 596 RSSRTCES 619
           RS+RT  S
Sbjct: 63  RSARTVSS 70


>AK024452-1|BAB15742.1| 1051|Homo sapiens FLJ00044 protein protein.
          Length = 1051

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 273 EQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNAS 428
           +  C+++  +QIQE+V    Q L+ G Y+      R  F+    MLR+++++
Sbjct: 312 DANCWHLDEEQIQEQVK---QLLSNGGYYGASQQLRSMFSKVREMLRMRDSN 360


>AF274934-1|AAK07513.1|   82|Homo sapiens PNAS-9 protein.
          Length = 82

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 216 HSYTVLRQPRHHQDEWLTMEQTCYNMMRKQIQEEV 320
           + Y+  ++ R H D+W   ++  Y +++K I+E+V
Sbjct: 8   YDYSQNQENRIHLDDWTAFDEYYYELLKKYIKEKV 42


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,716,804
Number of Sequences: 237096
Number of extensions: 1801536
Number of successful extensions: 5227
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5224
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)