Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0180
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01730.1 68414.m00092 expressed protein 31 0.49
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 30 1.5
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ... 30 1.5
At5g20930.1 68418.m02486 protein kinase, putative nearly identic... 29 2.6
At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR... 29 3.4
At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR... 29 3.4
At1g31410.1 68414.m03847 putrescine-binding periplasmic protein-... 29 3.4
At5g09320.1 68418.m01080 vacuolar sorting protein 9 domain-conta... 28 6.0
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3... 27 7.9
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ... 27 7.9
At2g23990.2 68415.m02866 plastocyanin-like domain-containing pro... 27 7.9
At2g23990.1 68415.m02865 plastocyanin-like domain-containing pro... 27 7.9
>At1g01730.1 68414.m00092 expressed protein
Length = 224
Score = 31.5 bits (68), Expect = 0.49
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 421 TRARDQAH*LPAHEGKADRLRKPTSSRTGPRKHGRGRSGASALEHALKLESDVTNSIREV 600
T A ++ LP+ A P++ T P GR R ALE L++ES +R +
Sbjct: 31 TSADQRSAELPSPAQPAQMTAPPSTVTTDPSSRGRKR----ALEANLQIESSNYYKMRLL 86
Query: 601 IKNLREH 621
+K+LR H
Sbjct: 87 VKDLRPH 93
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +1
Query: 424 RARDQAH*LPAHEGKADRLRKPTSSRTGPRKHGRGRSGASALEHALKLESDVTNS 588
+ AH L H K DRLRK + R R R+ A A K E ++S
Sbjct: 232 KVEPNAHKLEEHRRKYDRLRKEREDKKAERDRLRRRAEAQAAYDKAKKEEQSSSS 286
>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 386 LREXFFDAATEEREHATKLIDYLLMRG 466
L + F +++ EEREHA KL++Y RG
Sbjct: 132 LAKFFKESSLEEREHAEKLMEYQNKRG 158
>At5g20930.1 68418.m02486 protein kinase, putative nearly identical
to protein kinase tousled gi|433052|gb|AAA32874
Length = 688
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 454 AHEGKADRLRKPTSSRTGPRKHGRGRSGASALEHALKLESDVTNS 588
A++G+ + T +K GRGR+ ++ K +DVT S
Sbjct: 119 AYDGRKNDAESKTGLDVSKKKQGRGRASSTGRGRGSKTNNDVTKS 163
>At3g62800.2 68416.m07056 double-stranded RNA-binding domain
(DsRBD)-containing protein weak similarity to SP|P19525
Interferon-induced, double-stranded RNA-activated
protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
Pfam profile PF00035: Double-stranded RNA binding motif
Length = 355
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 473 TGSVNRPHHVQGPANTVVGEAAHQPSSTPSSWRVTSPTASGRSSRTCESTFNDYH 637
TGS P Q N+ V + + S PSS V +P + + E F D H
Sbjct: 156 TGSPTLPSERQEDVNSNVKSSPQEIHSQPSSKVVMTPDTPSKGIKVNEDEFPDLH 210
>At3g62800.1 68416.m07055 double-stranded RNA-binding domain
(DsRBD)-containing protein weak similarity to SP|P19525
Interferon-induced, double-stranded RNA-activated
protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
Pfam profile PF00035: Double-stranded RNA binding motif
Length = 355
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 473 TGSVNRPHHVQGPANTVVGEAAHQPSSTPSSWRVTSPTASGRSSRTCESTFNDYH 637
TGS P Q N+ V + + S PSS V +P + + E F D H
Sbjct: 156 TGSPTLPSERQEDVNSNVKSSPQEIHSQPSSKVVMTPDTPSKGIKVNEDEFPDLH 210
>At1g31410.1 68414.m03847 putrescine-binding periplasmic
protein-related similar to Chain A, Putrescine Receptor
(Potf) (GI:3891734) [Escherichia coli]; similar to Chain
C, Putrescine Receptor (Potf) (GI:3891736) [Escherichia
coli]; similar to Putrescine-binding periplasmic protein
precursor. (Swiss-Prot:P31133) [Escherichia coli]
Length = 524
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 602 MTSRMLLVTSLSSLRACSRADAPLLPRP 519
+++ +L LSSLR CS A A +LP P
Sbjct: 46 LSASTVLFIGLSSLRVCSPASARILPPP 73
>At5g09320.1 68418.m01080 vacuolar sorting protein 9
domain-containing protein / VPS9 domain-containing
protein contains similarity to Rab5 GDP/GTP exchange
factor, Rabex5 [Bos taurus] gi|2558516|emb|CAA04545;
contains Pfam profile PF02204: Vacuolar sorting protein
9 (VPS9) domain
Length = 712
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 617 SRKFLMTSRMLLVTSLSSLRACSRADAPLLPRP 519
+RK L RML + ++ +++A RA+ PLLP P
Sbjct: 495 NRKPLQRGRMLSIEAIQAVQALKRAN-PLLPPP 526
>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
- Arabidopsis thaliana, EMBL:AC009755
Length = 927
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 360 SIDTVNRPGFAXYSSMLRLKNASTRP-SSLTTCS*GES*QAP*TDLITYRAPQTRSWEKR 536
++D RPG+ + +KN STRP S + + Q P L T P+ +EK+
Sbjct: 470 AMDVTPRPGYYKGQTESTMKNTSTRPLQSKSDMAKSGKIQKPSVSLRT--PPKKLGFEKQ 527
Query: 537 RISPRARPQAGE*RHQQ 587
+P+ + + QQ
Sbjct: 528 SRPTSPKPELNKNQRQQ 544
>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 386 LREXFFDAATEEREHATKLIDYLLMRG 466
L + F +++ EEREHA L++Y RG
Sbjct: 130 LAKFFKESSVEEREHAELLMEYQNKRG 156
>At2g23990.2 68415.m02866 plastocyanin-like domain-containing
protein
Length = 226
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 467 KLTGSVNRPHHVQ-GPANTVVGEAAHQPSSTPSSWRVTSPTASGRSS 604
K+T V P+H + GPA V +PS+TP++ PT S +SS
Sbjct: 142 KVTVVVQSPNHPKPGPA-AVTPTLPPKPSTTPAAPAPAPPTPSPKSS 187
>At2g23990.1 68415.m02865 plastocyanin-like domain-containing
protein
Length = 207
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 467 KLTGSVNRPHHVQ-GPANTVVGEAAHQPSSTPSSWRVTSPTASGRSS 604
K+T V P+H + GPA V +PS+TP++ PT S +SS
Sbjct: 123 KVTVVVQSPNHPKPGPA-AVTPTLPPKPSTTPAAPAPAPPTPSPKSS 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,750,354
Number of Sequences: 28952
Number of extensions: 249082
Number of successful extensions: 702
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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