Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0179
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    27   3.1  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    26   4.1  

>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -1

Query: 159 YICNFFSDEVSEYPDRSIRFSVDDNSVVF---FEHVTKIPGDVVCYHHNQL 16
           Y+ +F++   S +    +   +D  SV F   ++H  +  GD VC  +N L
Sbjct: 201 YLKSFYNAGSSYFQREQVHQLMDGESVFFLKPWKHFNETSGDTVCVAYNPL 251


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/65 (23%), Positives = 26/65 (40%)
 Frame = -1

Query: 231 LYFFYRMYVYKITSVRASHPFYFWYICNFFSDEVSEYPDRSIRFSVDDNSVVFFEHVTKI 52
           +Y  +R     I     SH  YF  +  FF  +++  PDR +  ++     +        
Sbjct: 74  VYSLWRGISSVIMGAGPSHAIYF-SVLEFFKSKINASPDRPLASALAGACAITISDAFMT 132

Query: 51  PGDVV 37
           P DV+
Sbjct: 133 PFDVI 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,775
Number of Sequences: 5004
Number of extensions: 55132
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)