Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0179
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0178 + 6195402-6199158,6199438-6200003 30 1.4
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 29 4.2
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 29 4.2
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 28 5.6
05_06_0146 - 25983041-25983802 28 5.6
08_02_0574 - 18867623-18868033,18869751-18870209 28 7.4
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 28 7.4
01_05_0124 - 18380313-18380518,18380532-18380895 28 7.4
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589... 27 9.7
06_03_0502 + 21493442-21494341 27 9.7
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 9.7
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153... 27 9.7
01_01_0124 - 1145105-1145320,1145480-1145611,1146485-1146562,114... 27 9.7
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = -1
Query: 381 CPHPAYRYHR*HPISRSSCNLYWRGSTLEVASLPLGSWEGRSLDVLQHLLLYFFYRMYVY 202
C HP+ + + R+ C + WR TL V L S D + + F + +
Sbjct: 1175 CGHPSEMFGFVKEVFRT-CAMQWRMETL-VRELQYVERIFSSSDDARGKRVRDFVKQMII 1232
Query: 201 KITSVRASHPFYFWYICNFFSDEVS 127
K+ + RA HP YI FFSD+ S
Sbjct: 1233 KLEN-RAYHPEVVKYIMAFFSDDNS 1256
>12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 258 IALPMILVAEK-PPPTWTHANIDYTRTAKWDVSGDI 362
+A+P+ +AE PP T H ++ +T +W ++G+I
Sbjct: 934 LAIPLFSMAEPVPPKTIKHQDMAWTVWDRWTITGNI 969
>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 258 IALPMILVAEK-PPPTWTHANIDYTRTAKWDVSGDI 362
+A+P+ +AE PP T H ++ +T +W ++G+I
Sbjct: 1058 LAIPLFSMAEPVPPKTIKHQDMAWTVWDRWTITGNI 1093
>07_03_1774 + 29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 258 IALPMILVAEK-PPPTWTHANIDYTRTAKWDVSGDI 362
+ALP+ +AE PP H ++ +T +W + G++
Sbjct: 965 LALPLFSMAEPVPPKVMKHQDMSWTVWDRWSIKGNL 1000
>05_06_0146 - 25983041-25983802
Length = 253
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 339 SRSSCNLYWRGSTLEVASLPLGS 271
SRS ++Y++G T+ VA +P GS
Sbjct: 133 SRSETDVYYKGKTVSVAYVPAGS 155
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 371 RLIDITADIPFRGPRVIYIGVGPRWRWLLCH*D 273
RL+ T D+PFR + G PR+R C+ D
Sbjct: 13 RLVTTTCDMPFRCDGCLEPGYAPRYRCDACNFD 45
>03_02_0665 - 10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 258 IALPMILVAEK-PPPTWTHANIDYTRTAKWDVSGDI 362
+A+PM +AE PP H ++ +T +W + G+I
Sbjct: 1059 LAIPMFSMAEPLPPKVIKHQDMRWTIWDRWSIEGNI 1094
>01_05_0124 - 18380313-18380518,18380532-18380895
Length = 189
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 408 LGWPLKSLICPHPAYRYHR*HPISRSSCNLYWR--GSTLEVASLPLGSWEGRS 256
LG L LI P P +H SRS+ +L WR GS +E A S RS
Sbjct: 50 LGGLLLLLIYPPPHQGHHSQEAGSRSAASLSWRRSGSNMENAGYSPASRMARS 102
>11_06_0631 -
25656885-25657000,25658591-25658658,25658957-25658996,
25659742-25659820,25659918-25661707,25662030-25662037,
25662305-25662367,25662504-25662820
Length = 826
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 79 NRVVVNGKTYTPVRVFTYLIGKEVTNVPEIEWMACSNRGYFVHIHSVE-EVQQQVLKYIK 255
N VNGK + +V +IG E+ P W+ H V +V+++++ +++
Sbjct: 607 NVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLE 666
>06_03_0502 + 21493442-21494341
Length = 299
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/77 (27%), Positives = 30/77 (38%)
Frame = +3
Query: 219 RRSTAASVEVHQVIALPMILVAEKPPPTWTHANIDYTRTAKWDVSGDIDKPGEDKLVTSV 398
+++ AA VE V A E PP W + ++D D D+P D V
Sbjct: 190 KKAAAAEVEREAVEARRPATTRE-PPRVWLRVADEDPEPEEFDDEADDDEPEMDDDDADV 248
Query: 399 AIPAFDFKKDDNSSNAR 449
D + DD +N R
Sbjct: 249 GAGEVDARADDFINNFR 265
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +3
Query: 297 PTWTHANIDYTRTAKWDVSGDIDKPGEDKLVTSVAIPAFDFKKDDNSSNARLLGVAG 467
P + AN+ Y K + D DK G + + +V P F+ ++ + L +G
Sbjct: 1767 PLHSKANLSYDIAGKHGLFDDSDKGGNLQFMVNVIKPQFNLHSEEANGRFLLAAASG 1823
>01_06_1113 +
34613668-34614075,34614781-34614970,34615264-34615372,
34615822-34615912,34615948-34616076,34616306-34616804,
34617154-34617251
Length = 507
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 186 RASHPFYFWYICNFFSDEVSEYPDRSIRF-SVDDNSV 79
R H F F + NFFSD YPD+ + F SV N +
Sbjct: 413 RLLHTFKFMVLNNFFSD----YPDKPLEFPSVKVNQI 445
>01_01_0124 -
1145105-1145320,1145480-1145611,1146485-1146562,
1147022-1147199,1147269-1147441,1147531-1147632,
1147717-1147794,1148178-1148259,1148343-1148405,
1150196-1150275,1150529-1150723,1150812-1151073,
1151566-1151720,1151799-1151865,1151956-1152179,
1152322-1152451,1153228-1153284,1153396-1153527,
1153758-1154086
Length = 910
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = -1
Query: 282 PLGSWEGRSLDVLQHLLLYFFYRMYVYKITSVRASHPFYFWYICNFFSDEV--SEYPDRS 109
P+ + G + + HLL F+ +Y I V PF EV + Y D
Sbjct: 569 PVDIYVGGAEHSVLHLLYARFWHKVLYDIGVVSTKEPFKCLINQGLILGEVEYTAYRDNK 628
Query: 108 IRF-SVDDNSVVFFEHVTKIPGDVV 37
R+ S D NS + + K+P D V
Sbjct: 629 GRWVSADSNSSLIDCYQEKVPADKV 653
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,061,491
Number of Sequences: 37544
Number of extensions: 350278
Number of successful extensions: 880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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