Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0179
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16502| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=5)             30   1.4  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)          29   2.5  
SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)                   29   2.5  
SB_48100| Best HMM Match : Transformer (HMM E-Value=5.4)               29   3.3  
SB_17802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_37785| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_38375| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_21689| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_47449| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_54835| Best HMM Match : Laminin_EGF (HMM E-Value=0.13)              28   7.5  
SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08)                28   7.5  
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)            28   7.5  
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.9  
SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_16502| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=5)
          Length = 415

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 294 PPTWTHANIDY-TRTAKWDVSGDIDKPGEDKLVTSVAI---PAFDFKKDD 431
           P T    ++ Y T    WD + DID  GE K+ TSV+I   P  D  +D+
Sbjct: 120 PDTRIRRSVAYITDDILWDKNQDIDISGEGKIKTSVSIGVDPEMDLGEDN 169


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 294  PPTWTHANIDY-TRTAKWDVSGDIDKPGEDKLVTSVAI---PAFDFKKDD 431
            P T    ++ Y T    WD + DID  GE K+ TSV+I   P  D  +D+
Sbjct: 1929 PDTRIRRSVAYITDDILWDKNQDIDISGEGKIKTSVSIGVDPEMDLGEDN 1978


>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
          Length = 1592

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +1

Query: 31  ITDYVAGNLS--DVFEKYNRVVVNGKTYTP-VRVFTYLIGKEVTNVPEIEWMACSNRGYF 201
           +  YV G L   D  + +N V    K   P  R+F+YL   +    P    ++C N GY 
Sbjct: 188 LNGYVPGQLCKYDWAKVWNEVEAINKYMNPRTRIFSYLTNDKGEEFPGK--LSCDNNGYM 245

Query: 202 VHIHSVEEVQQQVLKY 249
             +   E +  Q+ +Y
Sbjct: 246 KRLVDNENIISQMQEY 261


>SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)
          Length = 355

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 167 ISGTFVTSFPMR*VNTLTGVYVFPLTTTLLYFSNTS 60
           + G FV +   + V TL    VFPLTTT+ Y S  S
Sbjct: 231 LMGLFVMTVCCQTVLTLACEQVFPLTTTIFYVSGIS 266


>SB_48100| Best HMM Match : Transformer (HMM E-Value=5.4)
          Length = 325

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +3

Query: 204 THTFCRRSTAASVEVHQVIALPMILVAEKPPPTWT----HANIDYTRTAKWDVSGDIDKP 371
           T +F RRS A     H+    P++L  E+PPP W+    ++   Y   A      D + P
Sbjct: 142 TPSFKRRSIAEPSNGHRNPGDPLVL--ERPPPRWSSNSPYSESYYNSLAVVLQRRDWENP 199

Query: 372 GEDKLVTSVAIPAFDFKKDDNSSNAR 449
           G  +L    A P F   +  NS  AR
Sbjct: 200 GVTQLNRLAAHPPFASWR--NSEEAR 223


>SB_17802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 263 PSHDPSGREATSNVDPRQYRLHEDREMGCQR 355
           PSH    + A S++DP    +H  R++  QR
Sbjct: 208 PSHTGRPKNAASSIDPINPEIHRPRDLSAQR 238


>SB_37785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 219 YRMYVYKITSVRASHPFYF-WYICNFFSDEVSEYPD-RSIR 103
           Y   V+ I    ASHPF+F WY+ N   + +   P  RS+R
Sbjct: 257 YSFTVFLILINSASHPFFFCWYMSNLRREVLKVIPALRSLR 297


>SB_38375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 263 PSHDPSGREATSNVDPRQYRLHEDREMGCQR 355
           PSH    + A S++DP    +H  R++  QR
Sbjct: 28  PSHTGRPKNAPSSIDPINPEIHRPRDLSAQR 58


>SB_21689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +3

Query: 210 TFCRRSTAASV-EVHQVIALPMILVAEKPPPTWT----HANIDYTRTAKWDVSGDIDKPG 374
           TF RR TA+   EV    +    LV E+PPP W+    ++   Y   A      D + PG
Sbjct: 104 TFQRRFTASDTNEVSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPG 163

Query: 375 EDKLVTSVAIPAFDFKKDDNSSNAR 449
             +L    A P F   +  NS  AR
Sbjct: 164 VTQLNRLAAHPPFASWR--NSEEAR 186


>SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 121 VFTYLIGKEVTNVPEIEWMACSNRGYFVHIHSV 219
           VF   +GK++T +PE+  +A +  G+   + S+
Sbjct: 200 VFVIAVGKKLTGLPELMSLASTTNGHLFRVQSM 232


>SB_47449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +3

Query: 219 RRSTAASVEVHQVIALPMILVAEKPPPTWT----HANIDYTRTAKWDVSGDIDKPGEDKL 386
           RRS     ++++ +     LV E+PPP W+    ++   Y   A      D + PG  +L
Sbjct: 20  RRSAECHTDLNEAVGPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQL 79

Query: 387 VTSVAIPAFDFKKDDNSSNAR 449
               A P F   +  NS  AR
Sbjct: 80  NRLAAHPPFASWR--NSEEAR 98


>SB_54835| Best HMM Match : Laminin_EGF (HMM E-Value=0.13)
          Length = 625

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = -1

Query: 249 VLQHLLLYFFYRMYVYKITSVRASHPFYFWYICNFFSDEVSEYPDRSIRFSVDDNSVVFF 70
           +L  L+ Y   R  + ++   + S    FW +  F    + E   R +   + DN +VFF
Sbjct: 297 LLIFLVAYILSRRRIIRMKVRKHSSLQAFWVLMLFMYKYIIETTMRLLHCPLVDNKMVFF 356

Query: 69  EHVTKIPGDVVCYHHNQLITAL 4
                  G+V C+    LI ++
Sbjct: 357 -----YDGNVQCFQGRHLIVSI 373


>SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08)
          Length = 442

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +3

Query: 225 STAASVEVHQVIALPMILVAEKPPPTWT----HANIDYTRTAKWDVSGDIDKPGEDKLVT 392
           S  A V  H + AL  + V E+PPP W+    ++   Y   A      D + PG  +L  
Sbjct: 311 SFGARVIFHCLKALAKMKVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQLNR 370

Query: 393 SVAIPAFDFKKDDNSSNAR 449
             A P F   +  NS  AR
Sbjct: 371 LAAHPPFASWR--NSEEAR 387


>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
          Length = 231

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 102 NVYSGQGIHLPHRKRSYKCTRNRMDGLL*QRLFCTHTFCRRSTAASVEVHQVIALP 269
           NV++ + ++   R ++ KCT    D  + Q   CT+T   + T    + H  +  P
Sbjct: 145 NVHAPRHVNARTRTQTLKCTYTHPDTQIIQTRKCTNTQTPKCTYTQQDTHTYVHAP 200


>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1747

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 437  AVIVFFEIKSWDGH*SH*FVLTRLIDITADIPFRGPRVIYIGV 309
            AV+VFF + + D +  H  V+++L+D    +   G +V  +G+
Sbjct: 892  AVVVFFTVAAKDSYMPHWDVVSKLVDAKKPLESLGLKVSRLGM 934


>SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1133

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +3

Query: 288  KPPPTWTHANIDYTRTAKWDVSGDIDKPGEDKLVTSVAIPAFDFKKDDNSSNARLLGVAG 467
            KPP  W  A  +  + +  +V   +       LVT V+ P FD K    S+  RL+ V G
Sbjct: 952  KPPCQWPSAEPEPVKESDLEVKATV-------LVTGVSAPPFDVKWKRYSTLGRLVRVYG 1004

Query: 468  TDVPIDSI 491
              +   SI
Sbjct: 1005 WCLRFKSI 1012


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,822,889
Number of Sequences: 59808
Number of extensions: 406168
Number of successful extensions: 2661
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2653
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)