Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0179
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    68   3e-13
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   3.6  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 67.7 bits (158), Expect = 3e-13
 Identities = 33/80 (41%), Positives = 50/80 (62%)
 Frame = +1

Query: 10  CNQLIMVITDYVAGNLSDVFEKYNRVVVNGKTYTPVRVFTYLIGKEVTNVPEIEWMACSN 189
           CNQ IM+ITD  +    +V + YN        + PVR+FTYLIG + +    +  MAC N
Sbjct: 374 CNQAIMLITDGPSDTFMEVIKHYNH------PHMPVRIFTYLIGTDKSGGKNLYKMACEN 427

Query: 190 RGYFVHIHSVEEVQQQVLKY 249
           +G+FV I+S EE +++V++Y
Sbjct: 428 KGFFVQINSPEEAKKKVVEY 447



 Score = 48.0 bits (109), Expect = 3e-07
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
 Frame = +3

Query: 240 VEVHQVIALPMILVAEKPPPTWTHANIDYTRTAKWDVSGDIDKPGED--KLVTSVAIPAF 413
           VE   V+A PM+L     P  W+   +          SG + +  E+  KLVT+V+ P F
Sbjct: 445 VEYALVMARPMVLYQADHPVHWSPVFMGGR-------SGILGRESENRRKLVTTVSTPVF 497

Query: 414 DFKKDDNSSNARLLGVAGTDVPIDSIAKL 500
           D +++ ++  A LLGV GTDVPI+ I K+
Sbjct: 498 D-RRNHSTRAANLLGVVGTDVPIEEIQKM 525



 Score = 29.5 bits (63), Expect = 0.096
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 509 HQLGVNGYSFIVSN 550
           H+LGVNGY+FIV N
Sbjct: 529 HKLGVNGYAFIVDN 542


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 465 LQRLAVSHYCCYRLF*NQKLGWPLKSLICPHPAYRYHR-*HPISRSSC---NLYWR 310
           ++R A  HY   R   ++ + +   SL C +  +RY R    I R+ C   + +WR
Sbjct: 417 VKRAAYRHYQTRRCQRSRSIYFDTHSLYCSYNRFRYRRYLSKIQRNLCRWPDSFWR 472


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,869
Number of Sequences: 2352
Number of extensions: 14285
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)