Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0179
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    63   2e-10
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z81586-7|CAB04693.1|  359|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    29   2.1  
AF039718-3|AAB96744.1|  329|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z35639-5|CAA84699.2|  534|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL022274-2|CAA18358.1|  329|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine rece...    27   8.7  
U42438-1|AAN84876.1|  459|Caenorhabditis elegans Maternal effect...    27   8.7  
AY081844-1|AAL91661.1|  362|Caenorhabditis elegans heparan 6-O s...    27   8.7  
AF016224-1|AAC27121.1|  459|Caenorhabditis elegans WD-40 repeat ...    27   8.7  
AC024755-9|AAF59640.2|  362|Caenorhabditis elegans Heparan sulph...    27   8.7  

>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
           protein 36 protein.
          Length = 1249

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = +1

Query: 10  CNQLIMVITDYVAGNLSDVFEKYNRVVVNGKTYTPVRVFTYLIGKEVTNVPEIEWMACSN 189
           C  +IM+ITD        +F+ YN           VRVFT+L+G E  +  E+  MAC+N
Sbjct: 403 CENVIMLITDGAPNAYKKIFDMYN-------ADKKVRVFTFLVGDEAIDFNEVREMACNN 455

Query: 190 RGYFVHIHSVEEVQQQVLKYIK 255
           RGY VH+ ++ +V +++  YI+
Sbjct: 456 RGYMVHVANMADVDEKIHHYIR 477



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 441 NARLLGVAGTDVPIDSIAKLAQPISWELMXXXXXXXXXWIFASTPFAHNIDKMGKYARPI 620
           N   +GVA  ++P+  +A+ + P +                 + P    ID   KY +  
Sbjct: 558 NETFMGVAAVNIPLTEVAQKSHPANIGSKSYFFMLDQNGFVMTHPQLRPIDPFTKYHKQN 617

Query: 621 YNSVD 635
           YN++D
Sbjct: 618 YNNMD 622


>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 115 VRVFTYLIGKEVTNVPEIEWMACSNRGYFVHIHSVEEVQQQ 237
           +R+F + +G   + +P  ++MAC + G +  I S+ +V+ Q
Sbjct: 376 IRIFGFSMGYGTSLLPLQQYMACKSHGGYSEIDSIMDVKPQ 416


>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 115 VRVFTYLIGKEVTNVPEIEWMACSNRGYFVHIHSVEEVQQQ 237
           +R+F + +G   + +P  ++MAC + G +  I S+ +V+ Q
Sbjct: 376 IRIFGFSMGYGTSLLPLQQYMACKSHGGYSEIDSIMDVKPQ 416


>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 115 VRVFTYLIGKEVTNVPEIEWMACSNRGYFVHIHSVEEVQQQ 237
           +R+F + +G   + +P  ++MAC + G +  I S+ +V+ Q
Sbjct: 376 IRIFGFSMGYGTSLLPLQQYMACKSHGGYSEIDSIMDVKPQ 416


>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 115 VRVFTYLIGKEVTNVPEIEWMACSNRGYFVHIHSVEEVQQQ 237
           +R+F + +G   + +P  ++MAC + G +  I S+ +V+ Q
Sbjct: 376 IRIFGFSMGYGTSLLPLQQYMACKSHGGYSEIDSIMDVKPQ 416


>Z81586-7|CAB04693.1|  359|Caenorhabditis elegans Hypothetical
           protein T05F1.9 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = -1

Query: 246 LQHLLLYFFYRMYVYKITSVRASHPFYFWYICNFFSDEVSEYPDRSIRFSVDDNSVVFFE 67
           + +LL+  +Y     KI   R  + F  W I     DE+ E  D     ++ D     F+
Sbjct: 35  ISNLLIENYYDFV--KINLARNGNEFSVWMIYGL--DELYEDDDNMEEITIGD---AVFD 87

Query: 66  HVTKIPGDVVCYHHNQLITAL 4
           H  +   +++ YH N+ + AL
Sbjct: 88  HSEEEMNNLILYHENRFVGAL 108


>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -1

Query: 246 LQHLLLYFFYRMYVYKITSVRASHPFYFWYICNFFSDEVSE 124
           ++H +++FFYR++V     V A     F  + ++F++E+ E
Sbjct: 48  IRHRMIFFFYRIFVDISYGVLACAYMIFCILYSYFTEELRE 88


>AF039718-3|AAB96744.1|  329|Caenorhabditis elegans Hypothetical
           protein T12F5.2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 629 AIVNWSCIFSHFIDVMSKGCRSKYPXNYS 543
           AI NW C+F  FI  M  G  S Y  N S
Sbjct: 276 AIFNWLCMFFKFISQMIFGTGSTYYKNVS 304


>Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical
           protein F44G3.5 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 270 WEGRSLDVLQHLLLYFFYRMYVYKITSVRASHPFYFWYICNFFSDEVS 127
           W+G ++ ++ H+L+YFF  + +  +   +  H     YI N    EV+
Sbjct: 3   WQGPAIAIILHILVYFFNFLLLIVLKRSKVLHSKV--YIFNMIISEVA 48


>Z35639-5|CAA84699.2|  534|Caenorhabditis elegans Hypothetical
           protein D2045.9 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +1

Query: 115 VRVFTYLIGKEVTNVPEIEWMACSNRGYFVHIHSVEE 225
           ++V  +++ KE   + +++W   S + YF  +  +EE
Sbjct: 68  IKVEIFILSKEDATIHQVKWWLDSTKQYFKSVKIIEE 104


>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 222 FYRMYVYKITSVRASHPFYFWYICNFFSDEVSEYPD 115
           FY  +V KI  +  SHP Y     NFF   V + PD
Sbjct: 525 FYEKFVKKIY-ILDSHPLYNLNFLNFFMHYVVQRPD 559


>AL022274-2|CAA18358.1|  329|Caenorhabditis elegans Hypothetical
           protein H24D24.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -1

Query: 303 TLEVASLPLGSWEGRSLDVLQHLLLYFFYRMYVYKITSVRASHPFYFWYICNFFSDEVSE 124
           TL V +  L  W G ++ VL+  ++ +    Y  +I  +       FW + +F  DE+ E
Sbjct: 124 TLSVITQKLAVWFGVTMAVLRVFIIKYPLSKYGIRIFLIVCLPHIPFW-VVDFKMDEIYE 182

Query: 123 Y 121
           Y
Sbjct: 183 Y 183


>Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK1058.3 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 93  DDNSVVFFEHVTKIPGDVVCYHHNQLIT 10
           D+N  +F +H  K    V+CYH N  +T
Sbjct: 92  DENDDLFKQHEVKGVCKVICYHPNSQLT 119


>U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 8 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 243 QHLLLYFFYRMYVYKITSVRASHPFYFWYICNFFSDEVSE 124
           +H ++ FFYR+++    +V A     F  + +FF++E+ E
Sbjct: 43  RHKMILFFYRLFLDVTYNVFACAYMTFSILYSFFTEELRE 82


>U42438-1|AAN84876.1|  459|Caenorhabditis elegans Maternal effect
           sterile protein 6 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 356 TADIPFRGPRVIYIGVGPRWRWLLCH*DHGKGDHLMYFN 240
           T ++P      I   V PR RWL+C    G G  +M+F+
Sbjct: 365 TMNVPSGSAWFIKFAVDPRRRWLVC---GGAGGSVMFFD 400


>AY081844-1|AAL91661.1|  362|Caenorhabditis elegans heparan 6-O
           sulfotransferase HST-6 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -1

Query: 231 LYFFYRMYVYKITSVRASHPFYFWYICNFFSDEVSEYPDRSIRFSVDDNSVVFFEHVTKI 52
           + +FY  +  K+        F+     N+  +++ +  D ++RF+   N V+ F H+ K 
Sbjct: 32  IVYFYIDFPLKVNMRTLEDGFHDDDFYNY--EDIVQREDTALRFNKTSNDVIVFVHIQKT 89

Query: 51  PG 46
            G
Sbjct: 90  AG 91


>AF016224-1|AAC27121.1|  459|Caenorhabditis elegans WD-40 repeat
           protein protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 356 TADIPFRGPRVIYIGVGPRWRWLLCH*DHGKGDHLMYFN 240
           T ++P      I   V PR RWL+C    G G  +M+F+
Sbjct: 365 TMNVPSGSAWFIKFAVDPRRRWLVC---GGAGGSVMFFD 400


>AC024755-9|AAF59640.2|  362|Caenorhabditis elegans Heparan
           sulphotransferase protein 6 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -1

Query: 231 LYFFYRMYVYKITSVRASHPFYFWYICNFFSDEVSEYPDRSIRFSVDDNSVVFFEHVTKI 52
           + +FY  +  K+        F+     N+  +++ +  D ++RF+   N V+ F H+ K 
Sbjct: 32  IVYFYIDFPLKVNMRTLEDGFHDDDFYNY--EDIVQREDTALRFNKTSNDVIVFVHIQKT 89

Query: 51  PG 46
            G
Sbjct: 90  AG 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,342
Number of Sequences: 27780
Number of extensions: 305787
Number of successful extensions: 866
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)