Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0179
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   2.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.8  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 87  NSVVFFEHVTKI 52
           NSVV+ EH+TK+
Sbjct: 91  NSVVYIEHLTKL 102


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 107 YVFPLTTTLLYFSNT 63
           +V+PLT  L YFS T
Sbjct: 296 WVYPLTGCLYYFSTT 310


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 35  QTTSPGILVT-CSKNTTELSSTEKRILRSGYSLTSSEKKLQ 154
           Q   P   VT  +KN T+  STEKR+ +     T+ E +LQ
Sbjct: 435 QCRYPNASVTPYNKNYTKFCSTEKRLTKQN---TAFENQLQ 472


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 210 TFCRRSTAASVEVHQV 257
           TFC++   A+ E+H +
Sbjct: 8   TFCKKMRKATKEIHSI 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,467
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)