Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0179
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19855.1 68418.m02359 expressed protein                             31   0.50 
At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase sm...    29   2.7  
At5g16910.1 68418.m01982 cellulose synthase family protein simil...    28   4.7  
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami...    28   6.1  
At1g63460.1 68414.m07176 glutathione peroxidase, putative contai...    27   8.1  

>At5g19855.1 68418.m02359 expressed protein
          Length = 203

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 22  IMVITDYVAGNLSDVFEKYNRVVVNGKTYTPVRVFTYLIGKEVTNVPEIEW 174
           ++++ + VAGN  D F    + +VN  TY  VR   + + +   N P+  W
Sbjct: 74  LLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYE--MNPPQYTW 122


>At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase small
           chain, putative / ribonucleotide reductase, putative
           similar to ribonucleotide reductase R2 [Nicotiana
           tabacum] GI:1044912; contains Pfam profile PF00268:
           Ribonucleotide reductase, small chain
          Length = 231

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 150 NFFSDEVSEYPDRSIRFSVDDNSVVFFEHVTKIPGD 43
           NFF   V EY   S+  SV  N+    +HV K+  D
Sbjct: 195 NFFEKRVGEYQKASVMSSVHGNAAFNDDHVFKLDED 230


>At5g16910.1 68418.m01982 cellulose synthase family protein similar
           to gi:2827143 cellulose synthase catalytic subunit,
           Arabidopsis thaliana, gi:9622886 cellulose synthase-7
           from Zea mays
          Length = 1145

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -2

Query: 344 PFRGPRVIYIGVGPRW--RWLLCH*DHGKGDH 255
           P + P+  ++  G  W   WL    DH KGDH
Sbjct: 530 PVKIPKATWMADGTHWPGTWLTSASDHAKGDH 561


>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
           protein similar to TAR RNA loop binding protein [Homo
           sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
           rRNA Methylase (RNA methyltransferase, TrmH) family
          Length = 1850

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 345 PISRSSCNLYWRGSTLEVASLPLGSWEGR 259
           P + SSC+++W  +T+E  +LP GS  G+
Sbjct: 899 PFADSSCSIFWSHTTVENGALP-GSVIGK 926


>At1g63460.1 68414.m07176 glutathione peroxidase, putative contains
           Pfam profile: PF00255 glutathione peroxidases
          Length = 167

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 31  ITDYVAGNLSDVFEKYNRVVVNGKTYTPVRVF 126
           ITD+V       F  +N++ VNG+  +P+  F
Sbjct: 84  ITDFVCTRFKSEFPIFNKIEVNGENASPLYKF 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,942
Number of Sequences: 28952
Number of extensions: 283964
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)