Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0176
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical p...    30   1.4  
AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical...    30   1.4  
AL132865-3|CAB60603.1|  310|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine re...    27   7.6  

>Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 80  NSFVLLIYLFVIIYSYLITSI 142
           N + +L+YL +++YSYL+T +
Sbjct: 119 NRYYILVYLGILVYSYLVTKL 139


>AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 80  NSFVLLIYLFVIIYSYLITSI 142
           N + +L+YL +++YSYL+T +
Sbjct: 119 NRYYILVYLGILVYSYLVTKL 139


>AL132865-3|CAB60603.1|  310|Caenorhabditis elegans Hypothetical
           protein Y62E10A.4 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 47  IHYTSHHVILTNSFVLLIYLFVIIYSYLITSI*FSYFS 160
           + Y   +  L NSF + ++LF + +S LIT   +SY S
Sbjct: 110 VTYPLRYSQLPNSFYIALFLFCVGFSVLITYSGYSYAS 147


>AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 50 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 80  NSFVLLIYLFVIIYSYLITSI 142
           N + LLIY F++IYS+L   +
Sbjct: 119 NRYYLLIYAFLVIYSFLAVQL 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,423,137
Number of Sequences: 27780
Number of extensions: 153674
Number of successful extensions: 373
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)