Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0176
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61750.1 68414.m06964 expressed protein contains Pfam profile...    28   4.1  
At1g48400.1 68414.m05406 F-box family protein contains F-box dom...    27   9.4  

>At1g61750.1 68414.m06964 expressed protein contains Pfam profile:
           PF01657 domain of unknown function
          Length = 352

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 5   FLKLINFYLIL*IEIHYTSHHVILTNSFVLLIYLFVIIYSYLITSI 142
           F+  ++ +L L   IH   H   L N    LIY+  IIY +L+++I
Sbjct: 284 FIVFLDEHLGLEQHIHVIYHIFFLINIKTYLIYITWIIYLFLLSTI 329


>At1g48400.1 68414.m05406 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 513

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 567 PMSFNVYQTKTLVRNI*WIFVLLLKCFVFVQR 472
           PMSF   +TK L  N      L  +CFV V+R
Sbjct: 130 PMSFVAIETKLLTSNTLVKLTLSARCFVEVER 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,502,126
Number of Sequences: 28952
Number of extensions: 130164
Number of successful extensions: 224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)