Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0174
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 5e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 99 3e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 82 5e-16
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.40
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 1.2
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 1.2
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.1
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 30 2.1
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 29 4.9
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (267), Expect = 5e-25
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Frame = +3
Query: 264 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 443
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 444 TREHALLAFTLGVKQLIVGVNK--WIPLNHHTVSP 542
TREHA+L +LGV QLIV +NK + L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 99.1 bits (236), Expect = 3e-21
Identities = 42/83 (50%), Positives = 60/83 (72%)
Frame = +3
Query: 261 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 440
T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268
Query: 441 QTREHALLAFTLGVKQLIVGVNK 509
QTREHA+LA T GVK L++ VNK
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNK 291
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 133 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +2
Query: 506 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 601
+MD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 291 KMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 49 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 195
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 81.8 bits (193), Expect = 5e-16
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = +3
Query: 258 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 371
ITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 23 ITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 193 MGKGSFKYAWVLDKLKAERE 252
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 306 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 49 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 144
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 300 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 315 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 494
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 495 VGVNK 509
+ NK
Sbjct: 123 ILQNK 127
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 258 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
I++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 65 ISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 312 IIDAPGHRDFIKNMITGTSQADCAVLIV 395
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +3
Query: 258 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 401
IT I + + + +D PGH F G D +++VAA
Sbjct: 124 ITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 64 THINIVVIGHVDSGKSTTTGHLIY 135
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Frame = +1
Query: 46 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 219
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 220 WV--LDKLKAERELVSQSIL-LSGSSKLASTMLPSLMLL 327
L +E +L+ +++ G + L T++ ++
Sbjct: 88 LPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGGAQII 126
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 171
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,090,792
Number of Sequences: 59808
Number of extensions: 495396
Number of successful extensions: 1437
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -