Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0173
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    30   0.29 
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    30   0.38 
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   2.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   2.7  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   3.5  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.1  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   6.1  

>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 707 FNSPRLENVSRNFPADLTDWSNPHLLDHNCPI-LLPRSTSL 588
           + S  +        + +T   +PH+LD N PI LLP+  SL
Sbjct: 279 YRSDSIHEYEEPLTSSITSLDSPHVLDENAPIPLLPKVVSL 319


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
 Frame = +2

Query: 272 EEGQSTLDDKILIETLRRQGVKAQDLIIDHAVYSRLLQEVLASE-------TPARKINSK 430
           EEGQS LD++ + E L       ++ IID    +++ +E L  E       TP   + SK
Sbjct: 42  EEGQSVLDEQEIEEALEEDDTNYEEDIIDDEESAQVDEEELEEEEEEEEDATPEPVVTSK 101

Query: 431 ENDQ 442
           +N +
Sbjct: 102 KNSR 105


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 505 TNTLPEHESTKAGLHEFFSSKMPDNTLRRLVLLGNKIGQLWS 630
           T T+ E  S      + F  K P    ++L L+G   G +WS
Sbjct: 165 TTTIEEASSDFVNALKSFYQKFPHLMKKKLYLVGESYGSIWS 206


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 707  FNSP-RLENVSRNFPADLTDWSNP-HLLDHNCPILLPRSTSLLNVLSGILEEKNSCNPAF 534
            F  P R+  + +NFPA L+ WS P  L++ +     PR      VLS   EEK      +
Sbjct: 2123 FREPIRISKLLQNFPALLSKWSTPTKLVEPSQFRASPRKVDQAVVLSS--EEKEILQKKY 2180

Query: 533  VL 528
             L
Sbjct: 2181 AL 2182


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 446 SQTWSLIQRNLTLQIGYM 499
           ++TW LI++NL  Q+G++
Sbjct: 321 TKTWHLIEKNLPTQVGFL 338


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 713 VTFNSPRLENVSRNFPADLTDW 648
           V F+   L N+SRN PA  ++W
Sbjct: 297 VAFHLQNLSNLSRNHPATTSNW 318


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 245 TSCPFKRRLEEGQST--LDDKILIETLRRQGVKAQDLIIDHAVYSRLLQEVLASETPARK 418
           +S     R+++ Q+T  L+ K+L +       +  D+         ++Q  L   TPA+ 
Sbjct: 222 SSLSIAERIKQAQNTPFLESKVLPQNNETSDEENVDVKPAAGTVKNVMQAFLQPATPAKD 281

Query: 419 INSKENDQISQ 451
             SKE  + SQ
Sbjct: 282 TASKEPSKSSQ 292


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +2

Query: 284 STLDDKILIETLRRQGVKAQDLIIDHAVYSRLLQEVLASETPARKINSKENDQISQTWSL 463
           +T+    L  T +    + +DL+ +   + + L+EVLA+    + + +  NDQ  +   L
Sbjct: 124 NTISSTALTPTEKILQKRIEDLLYERQNHQQQLEEVLATVDQLQSLVTNFNDQQDEVDEL 183

Query: 464 IQRNLTLQ 487
            +R +TL+
Sbjct: 184 RER-ITLK 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,721
Number of Sequences: 5004
Number of extensions: 57419
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)