Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0173
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6715| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_49066| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_43019| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_35318| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_6853| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87) 30 1.6
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 30 1.6
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 2.8
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 29 4.9
SB_54615| Best HMM Match : rve (HMM E-Value=4.4e-25) 29 4.9
SB_31807| Best HMM Match : rve (HMM E-Value=4.4e-25) 29 4.9
SB_54392| Best HMM Match : G6PD_N (HMM E-Value=1.3) 28 6.5
SB_8560| Best HMM Match : E-MAP-115 (HMM E-Value=6.4) 28 6.5
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024) 28 6.5
SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41) 28 8.6
SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1) 28 8.6
SB_36580| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6) 28 8.6
SB_32901| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_6715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 692 LENVSRNFPADLTDWSNPHLLDHNCPILLPRSTS 591
L N+ R + SN + DHNC +PRST+
Sbjct: 99 LPNIKRTYKTSFEPDSNQRIRDHNCKSTVPRSTN 132
>SB_49066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 692 LENVSRNFPADLTDWSNPHLLDHNCPILLPRSTS 591
L NV R + SN + DHNC PRST+
Sbjct: 7 LPNVKRMYKTSFEPDSNQRMRDHNCKSTAPRSTN 40
>SB_43019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 692 LENVSRNFPADLTDWSNPHLLDHNCPILLPRSTS 591
L NV R + SN + DHNC PRST+
Sbjct: 7 LPNVKRMYKTSFEPDSNQRMRDHNCKSTAPRSTN 40
>SB_35318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 692 LENVSRNFPADLTDWSNPHLLDHNCPILLPRSTS 591
L NV R + SN + DHNC PRST+
Sbjct: 7 LPNVKRMYKTSFEPDSNQRMRDHNCKSTAPRSTN 40
>SB_6853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 692 LENVSRNFPADLTDWSNPHLLDHNCPILLPRSTS 591
L NV R + SN + DHNC PRST+
Sbjct: 86 LPNVKRMYKTSFEPDSNQRMRDHNCKSTAPRSTN 119
>SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)
Length = 417
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 710 TFNSPRLENVSRNFPADLTDWSNPHLLDHNCPILLPRSTSLLNVLSGILEEKN 552
T N+ + EN +R P D TD P H C ILL S L + G++ +N
Sbjct: 364 TINTIQWENNARQVP-DPTDGQRPS--QHQCQILLMDSAKLRCLCCGVIVSRN 413
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 710 TFNSPRLENVSRNFPADLTDWSNPHLLDHNCPILLPRSTSLLNVLSGILEEKN 552
T N+ + EN +R P D TD P H C ILL S L + G++ +N
Sbjct: 1744 TINTIQWENNARQVP-DPTDGQRPS--QHQCQILLMDSAKLRCLCCGVIVSRN 1793
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 704 NSPRLENVSRNFPADL--TDWSNPHLLDHNCPILLPRSTSLLNVLSGILEEKNSCNPAFV 531
NSP V F D+ D + H LDH+ P+L T L+ + + N+ +
Sbjct: 181 NSPYQRRVHFRFQMDVLFVDKTIKHKLDHSDPVLDSSFTPLMTLSPENRRQNNATSSTRP 240
Query: 530 LSCSGSVFVQSY 495
+C + +V+ Y
Sbjct: 241 STCKTNSYVRKY 252
>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 826
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 710 TFNSPRLENVSRNFPADLTDWSNPHLLDHNCPILLPRSTSLLNVLSGILEEKN 552
T N+ + EN +R P TD P H C ILL S L + G++ +N
Sbjct: 773 TINTIQWENNARQVPGP-TDGQRPS--QHQCQILLMDSAKLRCLCCGVIVSRN 822
>SB_54615| Best HMM Match : rve (HMM E-Value=4.4e-25)
Length = 460
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +2
Query: 281 QSTLDDK--ILIETLRRQGVKAQDLIIDH-AVYSRLLQEVLASETPARKINSKENDQIS 448
Q+ +DK I+IET ++ + D + ++ A Y+R ++E T RK+N +END +S
Sbjct: 400 QNVEEDKSGIIIETRAQKRKRENDQVFENQAGYNRKMKE-----TRPRKLNFQENDYVS 453
>SB_31807| Best HMM Match : rve (HMM E-Value=4.4e-25)
Length = 460
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +2
Query: 281 QSTLDDK--ILIETLRRQGVKAQDLIIDH-AVYSRLLQEVLASETPARKINSKENDQIS 448
Q+ +DK I+IET ++ + D + ++ A Y+R ++E T RK+N +END +S
Sbjct: 400 QNVEEDKSGIIIETRAQKRKRENDQVFENQAGYNRKMKE-----TRPRKLNFQENDYVS 453
>SB_54392| Best HMM Match : G6PD_N (HMM E-Value=1.3)
Length = 277
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 302 ILIETLRRQGVKAQDLIIDH-AVYSRLLQEVLASETPARKINSKENDQISQTWSLIQR 472
I+IET ++ + D + ++ A Y+R ++E T RK+N +END +S +++ +
Sbjct: 171 IIIETRAQKRKRENDQVFENQASYNRKMKE-----TRPRKLNFQENDYVSVKINVVDK 223
>SB_8560| Best HMM Match : E-MAP-115 (HMM E-Value=6.4)
Length = 173
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 302 ILIETLRRQGVKAQDLIIDH-AVYSRLLQEVLASETPARKINSKENDQISQTWSLIQR 472
I+IET ++ + D + ++ A Y+R ++E T RK+N +END +S +++ +
Sbjct: 85 IIIETRAQKRKRENDQVFENQASYNRKMKE-----TRPRKLNFQENDYVSVKINVVDK 137
>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
Length = 2040
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Frame = +2
Query: 410 ARKINSKENDQISQTWSL--IQRNLTLQIGYMTEQTHCRNMKVQ----KQDYMNSSLLKC 571
A +N+KEND I++ +L + +L ++ + + H N KV KQ+ + +++L C
Sbjct: 447 AHNLNTKENDIINKAHNLNTKENDLNTKVHDLDTKVHDLNTKVHDLNTKQEKLWTNILTC 506
Query: 572 LITR 583
+ +R
Sbjct: 507 IQSR 510
>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
Length = 1234
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 302 ILIETLRRQGVKAQDLIIDH-AVYSRLLQEVLASETPARKINSKENDQISQTWSLIQR 472
I+IET ++ + D + ++ A Y+R ++E T RK+N +END +S +++ +
Sbjct: 20 IIIETRAQKRKRENDQVFENQAGYNRKMKE-----TRPRKLNFQENDYVSVKINVVDK 72
>SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)
Length = 977
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 302 ILIETLRRQGVKAQDLIIDH-AVYSRLLQEVLASETPARKINSKENDQISQTWSLIQR 472
I+IET ++ + D + ++ A Y+R ++E T RK+N +END +S +++ +
Sbjct: 236 IIIETRAQKRKRENDQVFENQAGYNRKMKE-----TRPRKLNFQENDYVSVKINVVDK 288
>SB_36580| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)
Length = 364
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 302 ILIETLRRQGVKAQDLIIDH-AVYSRLLQEVLASETPARKINSKENDQISQTWSLIQR 472
I+IET ++ + D + ++ A Y+R ++E T RK+N +END +S +++ +
Sbjct: 282 IIIETRAQKRKRENDQVFENQAGYNRKMKE-----TRPRKLNFQENDYVSVKINVVDK 334
>SB_32901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 692 LENVSRNFPADLTDWSNPHLLDHNCPILLPRSTS 591
L NV R + SN + DHNC P ST+
Sbjct: 7 LPNVKRMYKTSFEPDSNQRMRDHNCKSTAPCSTN 40
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,900,797
Number of Sequences: 59808
Number of extensions: 420726
Number of successful extensions: 887
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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