Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0173
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z22179-3|CAA80160.1|  288|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL032653-6|CAA21716.1|  152|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
           protein F31E3.4 protein.
          Length = 1131

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/33 (36%), Positives = 25/33 (75%)
 Frame = +2

Query: 389 VLASETPARKINSKENDQISQTWSLIQRNLTLQ 487
           ++ ++ PAR+ NS++  Q + TW++I R++T+Q
Sbjct: 461 LIVNQVPARRGNSQDETQETYTWNII-RHVTMQ 492


>Z22179-3|CAA80160.1|  288|Caenorhabditis elegans Hypothetical
           protein F58A4.3 protein.
          Length = 288

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 263 RRLEEGQSTLDDKILIETLRRQGVKAQDLIIDHAVYSRLLQEVLASETP 409
           RR   GQ  L++        R+  K +DL+I  A ++RL++E++ + TP
Sbjct: 189 RRYRPGQKALEEI-------RKYQKTEDLLIQKAPFARLVREIMQTSTP 230


>AL032653-6|CAA21716.1|  152|Caenorhabditis elegans Hypothetical
           protein Y54E5B.4 protein.
          Length = 152

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
 Frame = -1

Query: 707 FNSPRLENVSRNFPADLTDWSNPH-----LLDHNCPILLPRST--SLLNVLSGILEEKNS 549
           FNSP +  V    PA    +SN H     L D   P L  +S   S+L++LS   E+K+ 
Sbjct: 67  FNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLSSSKEKKHP 126

Query: 548 CNPA-FVLSCS 519
            + A +V +CS
Sbjct: 127 IDDAIYVRTCS 137


>Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical
           protein F54C8.2 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +2

Query: 263 RRLEEGQSTLDDKILIETLRRQGVKAQDLIIDHAVYSRLLQEVLASETP 409
           RR   GQ  L++        R+  +++DL+I  A ++RL++E++ + TP
Sbjct: 162 RRYRPGQKALEEI-------RKYQESEDLLIPKAPFARLVREIMQTSTP 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,757
Number of Sequences: 27780
Number of extensions: 317724
Number of successful extensions: 678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)