Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0173
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60280.1 68418.m07555 lectin protein kinase family protein co...    32   0.43 
At3g05800.1 68416.m00651 expressed protein                             31   0.57 
At5g11190.1 68418.m01308 AP2 domain-containing transcription fac...    30   1.8  
At1g76710.2 68414.m08928 SET domain-containing protein (ASHH1) l...    30   1.8  
At1g76710.1 68414.m08927 SET domain-containing protein (ASHH1) l...    30   1.8  
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit...    29   3.1  
At4g36120.1 68417.m05141 expressed protein                             29   4.0  

>At5g60280.1 68418.m07555 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain, and
           PF00069: Protein kinase domain
          Length = 657

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 559 SSKMPDNTLRRLVLLGNKIGQLWSRRWGLLQSVRSAGKFLETFSRRGLLN 708
           S  MP+ +L + +    +    WS+R G+L+ + SA K+L T + + +L+
Sbjct: 411 SKYMPNGSLDQFLFHNREPSLTWSKRLGILKGIASALKYLHTEATQVVLH 460


>At3g05800.1 68416.m00651 expressed protein
          Length = 211

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 254 PFKRRLEEGQSTLDDKILIETLRRQGVKAQDLIIDH 361
           PF+RRL+ GQ     K L+E LRR  V +++  + H
Sbjct: 24  PFRRRLQRGQRVFAPK-LMEALRRSRVSSEEAPVRH 58


>At5g11190.1 68418.m01308 AP2 domain-containing transcription
           factor, putative [Arabidopsis thaliana]
          Length = 189

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 689 ENVSRNFPADLTDWSNPHLLDHNCPILLPRSTS-LLN 582
           +N   NFP   ++  + H+ D N P++ P+S S LLN
Sbjct: 56  QNAKTNFPVVKSEEGSDHVKDVNSPLMSPKSLSELLN 92


>At1g76710.2 68414.m08928 SET domain-containing protein (ASHH1) low
           similarity to huntingtin interacting protein 1 [Homo
           sapiens] GI:12697196; contains Pfam profile PF00856: SET
           domain; identical to cDNA ASH1-like protein 1 (ASHH1)
           partial cds GI:15488417
          Length = 492

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 491 GYMTEQTHCRNMKVQKQDYMNSSLLKC 571
           GY     +C+N K QK +Y  + L+KC
Sbjct: 70  GYCPCGVYCKNQKFQKCEYAKTKLIKC 96


>At1g76710.1 68414.m08927 SET domain-containing protein (ASHH1) low
           similarity to huntingtin interacting protein 1 [Homo
           sapiens] GI:12697196; contains Pfam profile PF00856: SET
           domain; identical to cDNA ASH1-like protein 1 (ASHH1)
           partial cds GI:15488417
          Length = 492

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 491 GYMTEQTHCRNMKVQKQDYMNSSLLKC 571
           GY     +C+N K QK +Y  + L+KC
Sbjct: 70  GYCPCGVYCKNQKFQKCEYAKTKLIKC 96


>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 314

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 587 ED*YFWATRLGSYGREDGDYSSLSGQQENSLRHF 688
           +D  F A  + ++GR+  DY+  + +++ S+ HF
Sbjct: 37  DDEVFLAPEMNAFGRQFRDYTDTNSERQKSVEHF 70


>At4g36120.1 68417.m05141 expressed protein
          Length = 981

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = +2

Query: 263  RRLEEGQSTLDDKI-LIETLRRQGVKAQDLIIDHAVYSRLLQEVLAS-ETPARKINSKEN 436
            + LE  ++ L++K  LI  L+ Q   ++DL        + + E   S +  A+++ +K  
Sbjct: 766  QNLESTKAWLEEKEQLISKLKSQLTSSEDLQSLAETQLKCVTESYKSLDLHAKELEAKVK 825

Query: 437  DQISQTWSLIQRNLTLQIGYMTEQTHCRNMKVQKQDYMNSSLLK 568
                +T  L     T + G+      CR+++ + Q Y N +LL+
Sbjct: 826  SLEEETKRLEMAFTTEKHGHEETLAKCRDLQEKMQRYKNHNLLR 869


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,646,431
Number of Sequences: 28952
Number of extensions: 293806
Number of successful extensions: 719
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)