Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0172
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 32 0.093
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 28 1.5
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 2.0
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 2.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 2.6
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 3.5
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 26 4.6
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 26 4.6
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 4.6
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 26 4.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.6
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 6.1
SPBC146.08c |||translation initiation factor eIF1A-like|Schizosa... 26 6.1
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.1
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 8.1
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 25 8.1
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.1
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 8.1
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 8.1
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 31.9 bits (69), Expect = 0.093
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 96 ENKDGDESLESDEEVD-----NDENFDTKCKEKLSEKATEAYFERQKTSKNIMKLVY 251
+ D +E +D + D +DE+ + + KE L+ KA AY + K +NI K+ Y
Sbjct: 462 DESDNEEVAFADSDSDLGGQFDDEDSNLRWKEGLASKAALAYSQSGKRRRNIQKIFY 518
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +3
Query: 87 IDAENKDGDESLESDEEVDNDENFDTKCKEKLSEKATE 200
+D E+++GDE +E E + DE+F + + ++E+ E
Sbjct: 460 LDDEDEEGDEEME--EALSEDEDFQAESESDVAEEYDE 495
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 144 NDENFDTKCKEKLSEKATEAYFERQKTSKNIMKLVYGVLR 263
ND++ +TK K+ +E ++E E+ K KN + + +R
Sbjct: 281 NDDSDETKLKQSSTESSSELLDEKDKFDKNSLNDPFVTIR 320
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 90 DAENKDGDESLESDEEVDNDENFDTKCKEKLSEKATEAYFERQK 221
+ EN+ S ES E DN+E K SE+ T+ E ++
Sbjct: 86 ELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEESEDEE 129
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
Frame = +3
Query: 84 GIDAEN-KDGDE-------SLESDEEVDNDENFDTKCKEKLSE 188
G D+E +D DE + E DEE+D+DE FD + +++ ++
Sbjct: 39 GFDSEELEDNDEQGYSFGVNSEDDEEIDSDEAFDEEDEKRFAD 81
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 93 AENKDGDESLESDEEVDNDENFD 161
+E+ + DE ++ +EE D+DEN D
Sbjct: 241 SESYERDEDVDEEEEEDDDENND 263
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 212 ETKNFKKYYETCVWSFEIGHKTIDQNEEKDNSTDDEEI 325
+ +++++ + VWSF K++ +NE +N T EE+
Sbjct: 59 QNQSYERRKQKYVWSFNNITKSVIRNEHGNNLTLQEEL 96
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -1
Query: 255 LHTQVS*YFLKFFVSQNMLQWLFHLASLYI*YQNFHH---YPLLHRI 124
L+ +S Y LK+F+ L +F +Y ++ HH YP LH++
Sbjct: 106 LYDNISDYGLKYFLCSLPLFVMFSDFGIYWAHRFLHHRYVYPRLHKL 152
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 90 DAENKDGDESLESDEEVDNDENFDTKCKEKLSEKATEAYFERQKTSKNIMKLVY 251
D E+ + +E E + + FD + K+ +T A FERQ S L++
Sbjct: 1390 DTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLSSPNSSLLW 1443
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 99 NKDGDESLESDE--EVDNDENFDTKCKEKLSEKATEAYFERQKTSKNIMKLVYGVLRLVT 272
++DG S +S +VD+D+N + ++ EKAT +K S + +LV + L +
Sbjct: 531 SEDGQNSDDSGGWIDVDSDDNIELSDSDEEEEKATARKESDEKGSSSQKELVDRMTELAS 590
Query: 273 K 275
+
Sbjct: 591 Q 591
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 662 QLKTRNFGKRNSNWKS 709
Q+ T+ FGKR S WKS
Sbjct: 706 QMFTKKFGKRASEWKS 721
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 150 ENFDTKCKEKLSEKATEAY 206
+N +T CKEKL EK E +
Sbjct: 440 QNSETLCKEKLKEKLEELF 458
>SPBC146.08c |||translation initiation factor
eIF1A-like|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 218 KNFKKYYETCVWSFEIGHKTIDQNEEKDNSTDDEE 322
KN+KK W E ++++QN+ +++S+ +EE
Sbjct: 92 KNWKKQI---YWPKEFADESLNQNDSEESSSSEEE 123
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 691 PFPKIPGFKLXSPLRFPTGFFRLFI-SLVVSLQ 596
P P++P F L P P GF R + SLVV ++
Sbjct: 26 PMPELPSFLLAFPHAPPLGFLRPKLNSLVVQVK 58
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 87 IDAENKDGDESLESDEEVDNDENFDTKCKEK 179
+D + GDE SD+ VDN+ D + K
Sbjct: 607 MDEASSTGDEGYSSDDSVDNEMYSDEENSSK 637
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 96 ENKDGDESLESDEEVDNDENFDTKCKEKLSEKATEAYFERQKTSKNI 236
EN+ + +E++E + + F K KL EKA RQK K +
Sbjct: 166 ENRVKKDQIENNELTN--QPFSGKLHSKLKEKAATELLLRQKRDKKL 210
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 87 IDAENKDGDESLESDEEVD 143
+ ++ DGD++LESD+ VD
Sbjct: 121 VHSQRNDGDDNLESDKFVD 139
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 87 IDA-ENKDGDESLESDEEVDNDENFDTKCKEKLSEKATE 200
+DA + K G+E +E D D +EN D ++ +K TE
Sbjct: 49 VDAVDEKSGEEDVEMDTMEDENEN-DEDTEQTSEKKETE 86
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 87 IDAENKDGDESLESDEEVDNDENFDTKCKEKLSEKATEAYF 209
++ EN++ +++ ++ E+ + +E EKL +KA+ A F
Sbjct: 66 MEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTASF 106
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 93 AENKDGDESLES-DEEVDNDEN 155
A+ +D E LES DEEVDN ++
Sbjct: 350 ADEEDDGEDLESEDEEVDNSDD 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,462
Number of Sequences: 5004
Number of extensions: 38776
Number of successful extensions: 191
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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