Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0172
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.53 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.0  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   5.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   5.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   5.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   5.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.0  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 174 EKLSEKATEAYFERQKTSKNIMKL 245
           EKL  +  E +  +QKT  N+MKL
Sbjct: 505 EKLRLETKELFSSQQKTKNNLMKL 528


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 84  GIDAENKDGDESLESDEEVDN 146
           GID   KDG     SDE ++N
Sbjct: 452 GIDTPKKDGPTKSWSDESLNN 472


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 640 WENVKVXPT*NQEFWEKELQLEKP 711
           WEN    P  N+EF +  LQ  +P
Sbjct: 346 WENRATIPELNEEFRDLRLQDLRP 369


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 328 SDLLVISTV-ILFFILIYSFVTNLKTPYTSFIIFFEVF 218
           S LL++S V     I I+S   +L+TP   FI+   +F
Sbjct: 65  SMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIF 102


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 328 RLIQESYRYSEEKT*RKRTLGSR 396
           +L  E  ++ EEKT RKR   SR
Sbjct: 21  KLYNEKEKFLEEKTSRKRYSRSR 43


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 328 RLIQESYRYSEEKT*RKRTLGSR 396
           +L  E  ++ EEKT RKR   SR
Sbjct: 21  KLYNEKEKFLEEKTSRKRYSRSR 43


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 328 RLIQESYRYSEEKT*RKRTLGSR 396
           +L  E  ++ EEKT RKR   SR
Sbjct: 21  KLYNEKEKFLEEKTSRKRYSRSR 43


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 328 RLIQESYRYSEEKT*RKRTLGSR 396
           +L  E  ++ EEKT RKR   SR
Sbjct: 21  KLYNEKEKFLEEKTSRKRYSRSR 43


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 84  GIDAENKDGDESLESDEEVDNDENFD 161
           G+ A N +G+   E DE+ D+D + D
Sbjct: 375 GVGAMNANGEAVGEVDEDDDDDGDDD 400


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 328 SDLLVISTV-ILFFILIYSFVTNLKTPYTSFIIFFEVF 218
           S LL++S V     I I+S   +L+TP   FI+   +F
Sbjct: 65  SMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIF 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,056
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)