Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0171
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    29   0.67 
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           28   1.6  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    26   4.7  

>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 435 LKQRHCLKRNWNLLKVPPRLHHLLQNHQSTDFSSQGEDGLSLKLLSL-CPQRLSFEEPPL 611
           LK+ H     W L K PP ++HL  + +      +  + LS +L+S   P+ ++ +   L
Sbjct: 122 LKEEHQDNCLWRLHKFPPDIYHLSVSAELVQVGRR-FNSLSTRLVSTHLPEEMTLKR--L 178

Query: 612 EENLNRIQLD 641
           E+  N+I++D
Sbjct: 179 EKVANKIRVD 188


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 196 LCRYFLYSSICTKCQRN 246
           +C+  LYSSICT C  N
Sbjct: 501 VCQIILYSSICTSCSIN 517


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 574 CALKGCHLKNLP*KKI*TGYS*MGELAQTVGWKA 675
           CA+KG   K  P   I  G+   G LA   GW+A
Sbjct: 78  CAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRA 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,105
Number of Sequences: 5004
Number of extensions: 47080
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)