Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0171
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0128 - 5781932-5782123,5782296-5782377,5782452-5782779,578...    32   0.53 
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896...    31   1.2  
03_01_0226 + 1795120-1795686,1796040-1796171                           31   1.2  
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803...    29   4.9  
07_01_0179 - 1259353-1259466,1260818-1261150,1261523-1261681,126...    28   6.5  
04_03_0123 + 11514565-11514735,11515967-11516500                       28   8.6  

>03_02_0128 -
           5781932-5782123,5782296-5782377,5782452-5782779,
           5782870-5783124,5783495-5783583,5783967-5783992
          Length = 323

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 251 WKNSKAVAARQRKENAKLEKDQKTKKAVEDAEWE 352
           W+N K V A+++KE  +   DQK  KA+E+   E
Sbjct: 244 WENEKKVKAKRQKEQKEKVLDQKRAKALEEYSQE 277


>04_04_0791 +
           28088237-28088809,28089311-28089430,28089585-28089662,
           28089808-28089938,28090390-28090435,28090529-28090636
          Length = 351

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 257 NSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 355
           NSKA AAR+R+  A+ ++  + ++A E+  W +
Sbjct: 8   NSKAEAARERRSVAEADRRDRVERAKEEEYWRE 40


>03_01_0226 + 1795120-1795686,1796040-1796171
          Length = 232

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 257 NSKAVAARQRKENAKLEKDQKTKKAVEDAEWE 352
           N+KA AAR+R+  A+ ++  +  +A E+A W+
Sbjct: 8   NTKAEAARERRSAAEADRRDRDARAKEEAYWQ 39


>02_05_0970 -
           33179180-33179210,33179297-33179441,33180307-33180362,
           33180650-33180691,33180814-33180866,33181059-33181490,
           33181630-33181707,33181785-33181870,33183588-33183689,
           33183754-33183960,33184976-33185336,33185463-33185626,
           33185709-33185817,33186468-33186485
          Length = 627

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 30  FYLVPRTSQVFCTAVNEVYILKFKRIQTLPVY 125
           FY +PR     C A    Y L++K +  L +Y
Sbjct: 535 FYSMPRDEAQLCAASELTYSLRYKNVDVLALY 566


>07_01_0179 -
           1259353-1259466,1260818-1261150,1261523-1261681,
           1261914-1261946
          Length = 212

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -2

Query: 290 LCAVELLQLCYSSSEFLWHFVQILEYRKYLHKLC*NFTHALLLHMYISILFYYIYIHWER 111
           LC +E L   +S++   W  ++  E   Y      +F+H L   + +SI F+Y    WE+
Sbjct: 139 LCGLEFL---FSNN---WRPIRFTETVAYAPNYACSFSHLLQQLLRMSIAFFY----WEK 188

Query: 110 LYSL 99
           ++SL
Sbjct: 189 IFSL 192


>04_03_0123 + 11514565-11514735,11515967-11516500
          Length = 234

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 531 SSQGEDGLSLKLLSLCPQRLSFEEPPLEEN 620
           SS     +S   LSLCP R++   PP+  N
Sbjct: 72  SSSPASSVSHLFLSLCPSRVADHSPPIRHN 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,484,783
Number of Sequences: 37544
Number of extensions: 276688
Number of successful extensions: 648
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)