Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0171
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)                33   0.31 
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    29   3.8  
SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)                  28   6.7  
SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)          28   6.7  

>SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)
          Length = 265

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +2

Query: 185 FNKAYVGIFYIPVFAQNAKEIHWKNSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 358
           F    V    I  F    K+    NSKA  AR RK + K  + ++ ++  ED  WED+
Sbjct: 9   FGTVLVRSLPISPFETMPKKFKGVNSKAEEARARKASNKSAEKERKEREEEDKLWEDD 66


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +2

Query: 251  WKNSKAVAARQRK---ENAKLEKDQKTKKAVEDAE 346
            ++N+K+ A  +RK   EN K E+ QKTKK   DA+
Sbjct: 1253 FQNTKSEARAERKWLKENIKQEQYQKTKKKFPDAQ 1287


>SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)
          Length = 849

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 467 PIPFQAVPLLQLSFVIDLNVFFLALPFSVVSS*VYHHYLPILH 339
           P  +Q V      +V+D +  + ALP+  + + + HH +P+++
Sbjct: 286 PDRYQEVVGGMCQYVVDKHSSYGALPYDAIYAKIEHHLIPVIY 328


>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
          Length = 581

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = -2

Query: 278 ELLQLCYSSSEFLWHFVQILEYRKYLHKLC*NFTHALLLHMYISIL 141
           +L +   S  +++WH  + L++ + L KL       + +H+Y+++L
Sbjct: 404 DLQERVISWIDYMWHKKRSLDHERILEKLPEKLRGQIAVHVYLAVL 449


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,316,870
Number of Sequences: 59808
Number of extensions: 345148
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)