Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0171
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025727-8|AAG23390.2|  223|Caenorhabditis elegans Hypothetical ...    41   0.001
U41535-10|AAN84823.1|  251|Caenorhabditis elegans Lin-26 related...    28   5.9  
U41535-9|AAK67250.1|  296|Caenorhabditis elegans Lin-26 related ...    28   5.9  
U41535-8|AAT81202.1|  300|Caenorhabditis elegans Lin-26 related ...    28   5.9  
U41535-7|AAK67249.1|  309|Caenorhabditis elegans Lin-26 related ...    28   5.9  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    28   5.9  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   5.9  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   5.9  
AJ012486-1|CAA10050.1|  296|Caenorhabditis elegans LIR-1C protei...    28   5.9  
AJ012485-1|CAA10049.1|  309|Caenorhabditis elegans LIR-1A protei...    28   5.9  
Z66564-6|CAA91473.4|  737|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AY887904-1|AAX34416.1|  737|Caenorhabditis elegans anion transpo...    28   7.8  

>AC025727-8|AAG23390.2|  223|Caenorhabditis elegans Hypothetical
           protein Y73E7A.1a protein.
          Length = 223

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +2

Query: 239 KEIHWKNSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 358
           K+   +N K  AAR RK  AK ++  K  KA EDA+W DN
Sbjct: 3   KKFASENPKVTAARDRKATAKKDEADKKAKATEDAKWVDN 42


>U41535-10|AAN84823.1|  251|Caenorhabditis elegans Lin-26 related
           protein 1, isoform c protein.
          Length = 251

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = +3

Query: 447 HCLKRNWNLLKVPPRL--HHLLQNHQST---DFSSQGEDGLSLKLLSLCPQRL--SFEEP 605
           +C+K+N+  + +  RL  H  L++ Q     D  SQG DG+ L+L     QRL      P
Sbjct: 21  YCVKKNFERVSLLTRLEDHPYLRDDQDVVQDDTQSQGTDGMLLQLNDEERQRLMKMISTP 80

Query: 606 -PLEENLNRIQL 638
            P   ++ RIQ+
Sbjct: 81  GPQTLSMERIQM 92


>U41535-9|AAK67250.1|  296|Caenorhabditis elegans Lin-26 related
           protein 1, isoform a protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = +3

Query: 447 HCLKRNWNLLKVPPRL--HHLLQNHQST---DFSSQGEDGLSLKLLSLCPQRL--SFEEP 605
           +C+K+N+  + +  RL  H  L++ Q     D  SQG DG+ L+L     QRL      P
Sbjct: 21  YCVKKNFERVSLLTRLEDHPYLRDDQDVVQDDTQSQGTDGMLLQLNDEERQRLMKMISTP 80

Query: 606 -PLEENLNRIQL 638
            P   ++ RIQ+
Sbjct: 81  GPQTLSMERIQM 92


>U41535-8|AAT81202.1|  300|Caenorhabditis elegans Lin-26 related
           protein 1, isoform d protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = +3

Query: 447 HCLKRNWNLLKVPPRL--HHLLQNHQST---DFSSQGEDGLSLKLLSLCPQRL--SFEEP 605
           +C+K+N+  + +  RL  H  L++ Q     D  SQG DG+ L+L     QRL      P
Sbjct: 21  YCVKKNFERVSLLTRLEDHPYLRDDQDVVQDDTQSQGTDGMLLQLNDEERQRLMKMISTP 80

Query: 606 -PLEENLNRIQL 638
            P   ++ RIQ+
Sbjct: 81  GPQTLSMERIQM 92


>U41535-7|AAK67249.1|  309|Caenorhabditis elegans Lin-26 related
           protein 1, isoform b protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = +3

Query: 447 HCLKRNWNLLKVPPRL--HHLLQNHQST---DFSSQGEDGLSLKLLSLCPQRL--SFEEP 605
           +C+K+N+  + +  RL  H  L++ Q     D  SQG DG+ L+L     QRL      P
Sbjct: 21  YCVKKNFERVSLLTRLEDHPYLRDDQDVVQDDTQSQGTDGMLLQLNDEERQRLMKMISTP 80

Query: 606 -PLEENLNRIQL 638
            P   ++ RIQ+
Sbjct: 81  GPQTLSMERIQM 92


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
             protein.
          Length = 10578

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 260   SKAVAARQRKENAKLEKDQKTKKAVED 340
             S+  A +  ++ +KLE + KTKK +ED
Sbjct: 10044 SEIAAKKSAEQKSKLETEAKTKKVIED 10070


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 260   SKAVAARQRKENAKLEKDQKTKKAVED 340
             S+  A +  ++ +KLE + KTKK +ED
Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 260   SKAVAARQRKENAKLEKDQKTKKAVED 340
             S+  A +  ++ +KLE + KTKK +ED
Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090


>AJ012486-1|CAA10050.1|  296|Caenorhabditis elegans LIR-1C protein
           protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = +3

Query: 447 HCLKRNWNLLKVPPRL--HHLLQNHQST---DFSSQGEDGLSLKLLSLCPQRL--SFEEP 605
           +C+K+N+  + +  RL  H  L++ Q     D  SQG DG+ L+L     QRL      P
Sbjct: 21  YCVKKNFERVSLLTRLEDHPYLRDDQDVVQDDTQSQGTDGMLLQLNDEERQRLMKMISTP 80

Query: 606 -PLEENLNRIQL 638
            P   ++ RIQ+
Sbjct: 81  GPQTLSMERIQM 92


>AJ012485-1|CAA10049.1|  309|Caenorhabditis elegans LIR-1A protein
           protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = +3

Query: 447 HCLKRNWNLLKVPPRL--HHLLQNHQST---DFSSQGEDGLSLKLLSLCPQRL--SFEEP 605
           +C+K+N+  + +  RL  H  L++ Q     D  SQG DG+ L+L     QRL      P
Sbjct: 21  YCVKKNFERVSLLTRLEDHPYLRDDQDVVQDDTQSQGTDGMLLQLNDEERQRLMKMISTP 80

Query: 606 -PLEENLNRIQL 638
            P   ++ RIQ+
Sbjct: 81  GPQTLSMERIQM 92


>Z66564-6|CAA91473.4|  737|Caenorhabditis elegans Hypothetical
           protein F52D10.1 protein.
          Length = 737

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 486 PRLHHLLQNHQSTDF 530
           PRLHH LQ++  TDF
Sbjct: 85  PRLHHKLQSYSGTDF 99


>AY887904-1|AAX34416.1|  737|Caenorhabditis elegans anion
           transporter ABTS-2 protein.
          Length = 737

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 486 PRLHHLLQNHQSTDF 530
           PRLHH LQ++  TDF
Sbjct: 85  PRLHHKLQSYSGTDF 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,791,421
Number of Sequences: 27780
Number of extensions: 266156
Number of successful extensions: 852
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)