Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0170
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 114 8e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 101 6e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 78 6e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 33 0.18
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.41
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 32 0.54
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 1.2
SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56) 30 1.6
SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56) 30 1.6
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 2.2
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2) 29 5.0
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_30106| Best HMM Match : Plasmodium_HRP (HMM E-Value=2.3) 28 6.6
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13) 28 8.8
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 114 bits (274), Expect = 8e-26
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 436 TREHALLAFTLGVKQLIVGVNKMDS--LNHHTVSP 534
TREHA+L +LGV QLIV +NK+D L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 101 bits (242), Expect = 6e-22
Identities = 43/84 (51%), Positives = 61/84 (72%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269
Query: 436 TREHALLAFTLGVKQLIVGVNKMD 507
TREHA+LA T GVK L++ VNKMD
Sbjct: 270 TREHAMLAKTAGVKHLVILVNKMD 293
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +3
Query: 126 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
Score = 33.9 bits (74), Expect = 0.13
Identities = 11/24 (45%), Positives = 21/24 (87%)
Frame = +3
Query: 522 YSEPRFEEIKKEVSSYIKKIGYNP 593
++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 188
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 78.2 bits (184), Expect = 6e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 363
IDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 25 IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 186 MGKGSFKYAWVLDKLKAERE 245
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 477
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 478 QLIVGVNKMD 507
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 307 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 486
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 487 VGVNKMD 507
+ NK+D
Sbjct: 123 ILQNKID 129
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 235 LSVSRYQIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
L+ R Q + +F+ + IID PGH F G+S D A+L+V
Sbjct: 659 LNAIRIQTKMVKEEFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/85 (25%), Positives = 33/85 (38%)
Frame = +1
Query: 262 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 441
I + + + +D PGH F G D +++VAA QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180
Query: 442 EHALLAFTLGVKQLIVGVNKMDSLN 516
E A GV +I +NK+D N
Sbjct: 181 EAISHAQAAGV-PIIFAINKIDKPN 204
>SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 683
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 531 PRFEEIKKEVSSYIKKIGYNPAA-VAFVPIFWMARRQHVGAFNQNA 665
PR E KK I++ Y PA +A+VP +W +R + G +N NA
Sbjct: 640 PRHEVTKK---FEIERNPYQPAPRMAYVPPYWNLQRLNYGIYNGNA 682
>SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 683
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 531 PRFEEIKKEVSSYIKKIGYNPAA-VAFVPIFWMARRQHVGAFNQNA 665
PR E KK I++ Y PA +A+VP +W +R + G +N NA
Sbjct: 640 PRHEVTKK---FEIERNPYQPAPRMAYVPPYWNLQRLNYGIYNGNA 682
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 57 THINIVVIGHVDSGKSTTTGHLIY 128
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 462 HPRCQTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYN 590
H + + RR ++N + + P+FE++K + +S KKI N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 164
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
Length = 125
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 432 SNP*ACLARFHPRC-----QTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYN 590
+N A L RF C ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 25 NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82
>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 462 HPRCQTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYN 590
H ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 8 HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50
>SB_30106| Best HMM Match : Plasmodium_HRP (HMM E-Value=2.3)
Length = 376
Score = 28.3 bits (60), Expect = 6.6
Identities = 29/84 (34%), Positives = 38/84 (45%)
Frame = +1
Query: 427 NGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSL 606
NGQ EH LA TL V+ G ++ +L TV P H R LA L++
Sbjct: 78 NGQ-HEHRALA-TLTVEPGYNGQHEHRALATLTVEPGYNGQ-----HEHRALAA---LTV 127
Query: 607 SCPFSGWHGDNMLEPSTKMPWFKG 678
++G H D LE T P +KG
Sbjct: 128 EPQYNGQHEDRALETLTVEPGYKG 151
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 349 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTV 528
TGT+ D + + G+F++ ++ N + LLA +G+ + G+ +++ HT
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848
Query: 529 S 531
+
Sbjct: 849 A 849
>SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 28.3 bits (60), Expect = 6.6
Identities = 29/84 (34%), Positives = 38/84 (45%)
Frame = +1
Query: 427 NGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSL 606
NGQ EH LA TL V+ G ++ +L TV P H R LA L++
Sbjct: 257 NGQ-HEHRALA-TLTVEPGYNGQHEHRALATLTVEPGYNGQ-----HEHRALAA---LTV 306
Query: 607 SCPFSGWHGDNMLEPSTKMPWFKG 678
++G H D LE T P +KG
Sbjct: 307 EPQYNGQHEDRALETLTVEPGYKG 330
>SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)
Length = 1012
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 562 PHTSRRLATTQLLSLSCP-FSGWHGDNMLEPSTKMPWFKGMAXLEA 696
P T R + L SCP S W D +L ++ W K A + A
Sbjct: 608 PETERAVRNEALERESCPKSSAWDWDELLPSDLRLEWSKWEAEMVA 653
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,415,005
Number of Sequences: 59808
Number of extensions: 473577
Number of successful extensions: 1346
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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