Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0169
(484 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 95 3e-20
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 94 6e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 86 2e-17
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 73 2e-13
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.093
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 0.38
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.1
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.1
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 29 2.7
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 3.5
SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12) 28 4.6
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 6.1
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 27 6.1
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 95.1 bits (226), Expect = 3e-20
Identities = 43/49 (87%), Positives = 45/49 (91%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 178
M EK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 93.9 bits (223), Expect = 6e-20
Identities = 42/69 (60%), Positives = 53/69 (76%)
Frame = +1
Query: 259 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 438
L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQTREH
Sbjct: 5 LTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREH 64
Query: 439 ALLAFTLGV 465
A+L +LGV
Sbjct: 65 AILVRSLGV 73
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/66 (54%), Positives = 49/66 (74%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276
Query: 448 AFTLGV 465
A T GV
Sbjct: 277 AKTAGV 282
Score = 48.0 bits (109), Expect = 4e-06
Identities = 19/47 (40%), Positives = 33/47 (70%)
Frame = +2
Query: 116 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDM 256
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+ G T+++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEV 212
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 354
ALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 28 ALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 56.4 bits (130), Expect = 1e-08
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +2
Query: 176 MGKGSFKYAWVLDKLKAERELGITIDM 256
MGKGSFKYAWVLDKLKAERE GITID+
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDI 27
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 33.5 bits (73), Expect = 0.093
Identities = 24/65 (36%), Positives = 30/65 (46%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 236 LGITI 250
GIT+
Sbjct: 1987 RGITV 1991
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCG 127
N+ VI HVD GKST T L+ K G
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 283 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 295 IIDAPGHRDFIKNMITGTSQADCAVLIV 378
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 1.1
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 47 THINIVVIGHVDSGKSTTTGHLIY 118
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 38 NEKTHINIVVIGHVDSGKSTTTGHLIY 118
N+ + + V+G+VD+GKST G L +
Sbjct: 225 NDFMEVRVAVVGNVDAGKSTLLGVLTH 251
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 298 IDAPGHRDFIKNMITGTSQADCAVLIVA 381
+D PGH + M+ G + D A+L++A
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIA 96
>SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)
Length = 1114
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 291 NIVLASFELPESISIVIPSSRSAFSLSNTQAYLKDPLP--ISWASFSNFSMVRLSIPP 124
NI +P +++I SSR+ F +TQ K+PL + + ++ ++L + P
Sbjct: 326 NITSLKTPMPVNVAITATSSRALFVEWDTQKNRKEPLGFLVMYKTYDTDDFIKLDVGP 383
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 432
+T++D PGH IK +I G A +I GT E G ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 384
+ +D PGH F G D +++VAA
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,925
Number of Sequences: 59808
Number of extensions: 274952
Number of successful extensions: 710
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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