Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0169
(484 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 153 5e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 153 5e-38
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 153 5e-38
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 153 5e-38
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 136 6e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 95 2e-20
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 95 2e-20
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 89 2e-18
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 62 2e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 62 2e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 62 2e-10
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 58 3e-09
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 58 3e-09
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 36 0.015
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 34 0.047
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.082
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 32 0.19
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 32 0.25
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 32 0.25
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.58
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 0.77
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 0.77
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.0
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.8
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 29 1.8
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 29 1.8
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 5.4
AL132862-6|CAB60535.2| 205|Caenorhabditis elegans Hypothetical ... 27 5.4
U00050-5|AAM22063.1| 291|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z68134-1|CAA92226.2| 492|Caenorhabditis elegans Hypothetical pr... 27 9.4
U64600-4|AAK39201.1| 299|Caenorhabditis elegans C.elegans homeo... 27 9.4
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 153 bits (372), Expect = 5e-38
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MG EK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 142 bits (343), Expect = 2e-34
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTRE
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTRE 135
Query: 436 HALLAFTLGV 465
HALLA TLGV
Sbjct: 136 HALLAQTLGV 145
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 153 bits (372), Expect = 5e-38
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MG EK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 90.6 bits (215), Expect = 5e-19
Identities = 39/42 (92%), Positives = 42/42 (100%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 381
ALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 153 bits (372), Expect = 5e-38
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MG EK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 142 bits (343), Expect = 2e-34
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTRE
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTRE 135
Query: 436 HALLAFTLGV 465
HALLA TLGV
Sbjct: 136 HALLAQTLGV 145
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 153 bits (372), Expect = 5e-38
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MG EK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 142 bits (343), Expect = 2e-34
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTRE
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTRE 135
Query: 436 HALLAFTLGV 465
HALLA TLGV
Sbjct: 136 HALLAQTLGV 145
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 136 bits (330), Expect = 6e-33
Identities = 62/67 (92%), Positives = 63/67 (94%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MG EK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 212 DKLKAER 232
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 95.1 bits (226), Expect = 2e-20
Identities = 43/66 (65%), Positives = 51/66 (77%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 243 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 302
Query: 448 AFTLGV 465
+LGV
Sbjct: 303 LRSLGV 308
Score = 91.1 bits (216), Expect = 4e-19
Identities = 39/72 (54%), Positives = 54/72 (75%)
Frame = +2
Query: 41 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 220
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 221 KAERELGITIDM 256
+ ERE G+T+D+
Sbjct: 227 EEERERGVTMDI 238
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 95.1 bits (226), Expect = 2e-20
Identities = 43/66 (65%), Positives = 51/66 (77%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 261 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 320
Query: 448 AFTLGV 465
+LGV
Sbjct: 321 LRSLGV 326
Score = 91.1 bits (216), Expect = 4e-19
Identities = 39/72 (54%), Positives = 54/72 (75%)
Frame = +2
Query: 41 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 220
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 221 KAERELGITIDM 256
+ ERE G+T+D+
Sbjct: 245 EEERERGVTMDI 256
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 88.6 bits (210), Expect = 2e-18
Identities = 38/66 (57%), Positives = 49/66 (74%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L
Sbjct: 182 FETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSML 241
Query: 448 AFTLGV 465
T GV
Sbjct: 242 VKTAGV 247
Score = 84.2 bits (199), Expect = 4e-17
Identities = 36/74 (48%), Positives = 53/74 (71%)
Frame = +2
Query: 35 GNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 214
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 215 KLKAERELGITIDM 256
ERE G T+++
Sbjct: 164 TNDEEREKGKTVEV 177
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 62.1 bits (144), Expect = 2e-10
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +1
Query: 265 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 444
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 445 LAFTLGV 465
LA +GV
Sbjct: 159 LARQVGV 165
Score = 35.5 bits (78), Expect = 0.020
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 41 EKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
+K H+N+ IGHVD GK+T T ++ G R E + +E +G A+ L
Sbjct: 46 DKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFHL 105
Query: 212 DKLKAER 232
+ A+R
Sbjct: 106 EYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 62.1 bits (144), Expect = 2e-10
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +1
Query: 265 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 444
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 445 LAFTLGV 465
LA +GV
Sbjct: 160 LARQVGV 166
Score = 35.5 bits (78), Expect = 0.020
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 41 EKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
+K H+N+ IGHVD GK+T T ++ G R E + +E +G A+ L
Sbjct: 47 DKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFHL 106
Query: 212 DKLKAER 232
+ A+R
Sbjct: 107 EYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 62.1 bits (144), Expect = 2e-10
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +1
Query: 265 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 444
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 445 LAFTLGV 465
LA +GV
Sbjct: 160 LARQVGV 166
Score = 35.5 bits (78), Expect = 0.020
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 41 EKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
+K H+N+ IGHVD GK+T T ++ G R E + +E +G A+ L
Sbjct: 47 DKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFHL 106
Query: 212 DKLKAER 232
+ A+R
Sbjct: 107 EYETAKR 113
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 58.4 bits (135), Expect = 3e-09
Identities = 31/55 (56%), Positives = 36/55 (65%)
Frame = +1
Query: 301 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 465
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GV
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGV 161
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 44 KTHINIVVIGHVDSGKSTTT 103
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 58.4 bits (135), Expect = 3e-09
Identities = 31/55 (56%), Positives = 36/55 (65%)
Frame = +1
Query: 301 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 465
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GV
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGV 161
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 44 KTHINIVVIGHVDSGKSTTT 103
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 35.9 bits (79), Expect = 0.015
Identities = 27/65 (41%), Positives = 33/65 (50%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 236 LGITI 250
GIT+
Sbjct: 74 RGITV 78
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 34.3 bits (75), Expect = 0.047
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
VT +D PGH F G AD VL+VAA G
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.5 bits (73), Expect = 0.082
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
NI + H+DSGK+T T ++Y G ID + +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 236 LGITI 250
GITI
Sbjct: 96 RGITI 100
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+ IID PGH DF + D AVL++ G G
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 33.1 bits (72), Expect = 0.11
Identities = 34/123 (27%), Positives = 55/123 (44%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 236 LGITIDMLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSS*LPVPVNSKLVSL 415
GIT+ + + + + L L+DT S E R +A+C L + ++ V
Sbjct: 86 RGITVKAQTAALRHRGYL---LNLIDTP-GHVDFSAEVSRSLAVCDGILLLVAANQGVQA 141
Query: 416 RTV 424
+T+
Sbjct: 142 QTI 144
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 283 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
Y + +ID PGH DF + + D +L+VAA G
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 32.3 bits (70), Expect = 0.19
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 450
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLA 120
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 26 PKMGNEKTHINIVVIGHVDSGKSTTT 103
P + +N+ ++GHVDSGK+T T
Sbjct: 5 PSTSSSVGPLNLGILGHVDSGKTTLT 30
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 31.9 bits (69), Expect = 0.25
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCG 127
M ++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 283 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 31.9 bits (69), Expect = 0.25
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCG 127
M ++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 283 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.58
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 286 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 381
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 0.77
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 274 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 0.77
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 274 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 295 IIDAPGHRDFIKNMITGTSQADCAVLIV 378
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 134 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 134 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 26 PKMGNEKTHINIVVIGHVDSGKSTTT 103
P + +N+ ++GHVDSGK+T T
Sbjct: 5 PSTSSSVGPLNLGILGHVDSGKTTLT 30
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 8 FVIRD*PKMGNEKTHINIVVIGHVDSGKSTTTGHLIY 118
++IRD P + + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 8 FVIRD*PKMGNEKTHINIVVIGHVDSGKSTTTGHLIY 118
++IRD P + + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
+I+ GH+D S GH +K GI E FE E ++ + + + ERE
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATSTSYERE 1691
Query: 236 LGI 244
L +
Sbjct: 1692 LAM 1694
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 289 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 384
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 378
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 378
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AL132862-6|CAB60535.2| 205|Caenorhabditis elegans Hypothetical
protein Y73F8A.10 protein.
Length = 205
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 288 IVLASFELPESISIVIPSSRSAFSLSNT 205
I LA++ P+S++ V+P S ++SNT
Sbjct: 8 IFLAAYGFPDSLACVLPEKTSPSTVSNT 35
>U00050-5|AAM22063.1| 291|Caenorhabditis elegans Hypothetical
protein F09F7.7a protein.
Length = 291
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 210 WTN*RLSVSLVSQSICSLEVRN*QVLCYHH 299
W N +S++L++ S+ +L N LCY H
Sbjct: 191 WGNRLISINLINGSVMTLSNDNKSFLCYVH 220
>Z68134-1|CAA92226.2| 492|Caenorhabditis elegans Hypothetical
protein T27A8.1 protein.
Length = 492
Score = 26.6 bits (56), Expect = 9.4
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +1
Query: 199 CLGIGQTKG*A*AWYHNRYALWKFET---SKYYVTIIDAPGHRDFIKNMITGTSQAD-CA 366
C QTK W N+YAL KF + +IDA D + ++ T D A
Sbjct: 327 CEKFPQTKKLRYLWEENKYALLKFIDLIHGAIHGLVIDA----DTGEGIVNATVSIDERA 382
Query: 367 VLIVAAGTGEF--EAGISKNGQTREHA 441
++V+ G GEF A + K T +H+
Sbjct: 383 KIVVSYGEGEFWRLANMGKYDLTFDHS 409
>U64600-4|AAK39201.1| 299|Caenorhabditis elegans C.elegans homeobox
protein 30 protein.
Length = 299
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 238 WYHNRYALWKFETSKYYVTIIDAPGHRDFIKNMI 339
WY NR WK + + + ++ PG+ ++N+I
Sbjct: 204 WYQNRRTKWKRQATS-GMDLLSEPGNLSAVQNLI 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,245,030
Number of Sequences: 27780
Number of extensions: 203334
Number of successful extensions: 692
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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