Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0169
(484 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 137 3e-33
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 137 3e-33
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 137 3e-33
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 137 3e-33
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 85 2e-17
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 83 7e-17
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 57 5e-09
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 57 5e-09
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 33 0.076
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 33 0.076
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.10
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 33 0.10
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 33 0.10
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.13
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.13
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.13
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 32 0.18
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 32 0.18
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 32 0.18
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 32 0.23
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 32 0.23
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 0.94
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 0.94
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.94
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 1.2
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.2
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 28 2.9
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 28 3.8
At5g06810.1 68418.m00770 mitochondrial transcription termination... 27 6.6
At5g44910.1 68418.m05506 Toll-Interleukin-Resistance (TIR) domai... 27 8.8
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 27 8.8
At5g27540.1 68418.m03297 GTP-binding protein-related low similar... 27 8.8
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 27 8.8
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 27 8.8
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 8.8
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 8.8
At1g16020.2 68414.m01922 expressed protein 27 8.8
At1g16020.1 68414.m01921 expressed protein 27 8.8
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 137 bits (332), Expect = 3e-33
Identities = 65/75 (86%), Positives = 67/75 (89%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MG EK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 133 bits (322), Expect = 5e-32
Identities = 61/70 (87%), Positives = 66/70 (94%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTRE
Sbjct: 76 ALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 135
Query: 436 HALLAFTLGV 465
HALLAFTLGV
Sbjct: 136 HALLAFTLGV 145
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 137 bits (332), Expect = 3e-33
Identities = 65/75 (86%), Positives = 67/75 (89%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MG EK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 133 bits (322), Expect = 5e-32
Identities = 61/70 (87%), Positives = 66/70 (94%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTRE
Sbjct: 76 ALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 135
Query: 436 HALLAFTLGV 465
HALLAFTLGV
Sbjct: 136 HALLAFTLGV 145
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 137 bits (332), Expect = 3e-33
Identities = 65/75 (86%), Positives = 67/75 (89%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MG EK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 133 bits (322), Expect = 5e-32
Identities = 61/70 (87%), Positives = 66/70 (94%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTRE
Sbjct: 76 ALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 135
Query: 436 HALLAFTLGV 465
HALLAFTLGV
Sbjct: 136 HALLAFTLGV 145
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 137 bits (332), Expect = 3e-33
Identities = 65/75 (86%), Positives = 67/75 (89%)
Frame = +2
Query: 32 MGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MG EK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 133 bits (322), Expect = 5e-32
Identities = 61/70 (87%), Positives = 66/70 (94%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTRE
Sbjct: 76 ALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 135
Query: 436 HALLAFTLGV 465
HALLAFTLGV
Sbjct: 136 HALLAFTLGV 145
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 85.0 bits (201), Expect = 2e-17
Identities = 38/66 (57%), Positives = 47/66 (71%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEFE G + GQTREH L
Sbjct: 174 FETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQL 233
Query: 448 AFTLGV 465
A TLGV
Sbjct: 234 AKTLGV 239
Score = 74.1 bits (174), Expect = 4e-14
Identities = 31/73 (42%), Positives = 52/73 (71%)
Frame = +2
Query: 38 NEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 217
N+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 97 NKKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDT 156
Query: 218 LKAERELGITIDM 256
+ ER G T+++
Sbjct: 157 NEEERLKGKTVEV 169
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 83.4 bits (197), Expect = 7e-17
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +2
Query: 29 KMGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 208
K + + +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW
Sbjct: 232 KESDALSQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWA 291
Query: 209 LDKLKAERELGITI 250
LD+ ERE GIT+
Sbjct: 292 LDESAEERERGITM 305
Score = 75.4 bits (177), Expect = 2e-14
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQTREHAL 444
F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG GQTREHA
Sbjct: 312 FNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQTREHAR 371
Query: 445 LAFTLGV 465
+ GV
Sbjct: 372 VLRGFGV 378
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 57.2 bits (132), Expect = 5e-09
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = +1
Query: 265 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 444
++ET + +D PGH D++KNMITG +Q D A+L+V+ G QT+EH L
Sbjct: 136 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHIL 188
Query: 445 LAFTLGV 465
LA +GV
Sbjct: 189 LAKQVGV 195
Score = 39.9 bits (89), Expect = 9e-04
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 2 RSFVIRD*P-KMGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 163
RSF +R K +K H+NI IGHVD GK+T T L I +K+++
Sbjct: 62 RSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 57.2 bits (132), Expect = 5e-09
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +1
Query: 265 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 444
++ET+K + +D PGH D++KNMITG +Q D +L+V+ G QT+EH L
Sbjct: 124 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHIL 176
Query: 445 LAFTLGV 465
LA +GV
Sbjct: 177 LARQVGV 183
Score = 31.9 bits (69), Expect = 0.23
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 44 KTHINIVVIGHVDSGKSTTT 103
K H+N+ IGHVD GK+T T
Sbjct: 65 KPHVNVGTIGHVDHGKTTLT 84
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.5 bits (73), Expect = 0.076
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 274 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+ Y I+D PGH +F M AD AVLIV A G
Sbjct: 206 SKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.5 bits (73), Expect = 0.076
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 274 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+ Y I+D PGH +F M AD AVLIV A G
Sbjct: 206 SKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 33.1 bits (72), Expect = 0.10
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 271 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
E S Y + +ID PGH DF + S A+L+V A G
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 20 D*PKMGNEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 139
D K +EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 33.1 bits (72), Expect = 0.10
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 253 YALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 432
Y WK Y V IID PGH DF + D A+L++ + G I+ + Q R
Sbjct: 127 YCTWK----DYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR 182
Query: 433 EH 438
+
Sbjct: 183 RY 184
Score = 31.1 bits (67), Expect = 0.41
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 236 LGITI 250
GITI
Sbjct: 117 KGITI 121
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 33.1 bits (72), Expect = 0.10
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 253 YALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 432
Y WK Y V IID PGH DF + D A+L++ + G I+ + Q R
Sbjct: 127 YCTWK----DYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR 182
Query: 433 EH 438
+
Sbjct: 183 RY 184
Score = 31.1 bits (67), Expect = 0.41
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 236 LGITI 250
GITI
Sbjct: 117 KGITI 121
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.13
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGG 130
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 283 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.13
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 44 KTHINIVVIGHVDSGKSTTTGHLIYKCG 127
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 32.3 bits (70), Expect = 0.18
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 236 LGITIDMLSGSSKLASTMLP-SLMLLDTEISSRT*SQEPLRLIALCSS*LPVPVNSKLVS 412
GITI + + + P L L+DT S E R +A C L V S+ V
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTP-GHVDFSYEVSRSLAACEGALLVVDASQGVE 190
Query: 413 LRTV 424
+T+
Sbjct: 191 AQTL 194
Score = 30.7 bits (66), Expect = 0.54
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 147 YEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 32.3 bits (70), Expect = 0.18
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 274 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 384
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 32.3 bits (70), Expect = 0.18
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 274 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 384
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 31.9 bits (69), Expect = 0.23
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 286 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 384
+V+ +D PGH + M+ G + D A+LI+AA
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +1
Query: 268 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 384
FE SK +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 0.94
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 295 IIDAPGHRDFIKNMITGTSQADCAVLIV 378
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 0.94
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 295 IIDAPGHRDFIKNMITGTSQADCAVLIV 378
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 0.94
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 295 IIDAPGHRDFIKNMITGTSQADCAVLIV 378
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 277 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 378
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCG 127
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 378
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = -2
Query: 381 SYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESISIVIPSSRSAFSLSN 208
++D+HS +L+ D + D + ++ N+VL F P+ ++ + +R A L N
Sbjct: 52 AFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIAR-AIELPN 108
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 298 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
+D PGH F G D A+++VAA G
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDG 588
>At5g06810.1 68418.m00770 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 1141
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 107 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDMLS 262
H + G+D + I K KEA+E+ S++ + K+KA +LG + LS
Sbjct: 174 HHVLCYSGVDPKRIGKIFKEAREV--FSYETGVLASKIKAYEDLGFSRLFLS 223
>At5g44910.1 68418.m05506 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 241
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +1
Query: 250 RYALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 429
+Y +W + V + A +R I+N+ T +++ AV+I + E E +++ +
Sbjct: 28 KYLVWGLRDERVNVFVDRAEANRRDIRNISTKIEESNIAVVIFSKRYTESEMCLNELQKM 87
Query: 430 REH 438
EH
Sbjct: 88 YEH 90
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 209 IPKHI*RILYPFPGPPSRTSRWYVC 135
+P H+ L GPPS +SR Y C
Sbjct: 110 LPSHVPTYLKAAVGPPSSSSRRYFC 134
>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
to Mig-2-like GTPase Mtl [Drosophila melanogaster]
GI:7271872; contains Pfam profile PF00036: EF hand
Length = 648
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 277 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 411
++Y +D PG ++ ++ G + LIVAA T F +
Sbjct: 2 ARYAAGAVDCPGSPKSVRIVVVGDKGTGKSSLIVAAATDSFPPNV 46
>At5g24280.1 68418.m02856 expressed protein ; expression supported
by MPSS
Length = 1634
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 443 KACSRV*PFLEIPASNSPVPAATMSTAQSA*EVPVIMFLMKS 318
K+C RV F+++ A SP P+ T +Q+ V + F KS
Sbjct: 507 KSCRRVKCFVDLDAGFSPTPSKTDLASQNPFSVALRNFGSKS 548
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 438 MLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLA 277
++ + + D F+G + +I LRG+ HVLDE RS++D VL+
Sbjct: 343 LIEEIMIGEDKLIHFSGC-EMGQACSIVLRGASHHVLDE--AERSLHDALCVLS 393
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 178
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 178
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At1g16020.2 68414.m01922 expressed protein
Length = 502
Score = 26.6 bits (56), Expect = 8.8
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 447 EQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSIN-DGNIVLASF 271
E+G + LT+ RDT+ E + A SLR + ++ VS +++ D + L +F
Sbjct: 170 ERGTVQMLTLARDTAVEVQSLVQVLDSCAGSLRCHSMILFQDLLVSTTLSADDTVDLFTF 229
Query: 270 ELPESISIVIPSSRSAFS 217
+ S + S S++S
Sbjct: 230 AVMRLTSKALSSDTSSWS 247
>At1g16020.1 68414.m01921 expressed protein
Length = 515
Score = 26.6 bits (56), Expect = 8.8
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 447 EQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSIN-DGNIVLASF 271
E+G + LT+ RDT+ E + A SLR + ++ VS +++ D + L +F
Sbjct: 183 ERGTVQMLTLARDTAVEVQSLVQVLDSCAGSLRCHSMILFQDLLVSTTLSADDTVDLFTF 242
Query: 270 ELPESISIVIPSSRSAFS 217
+ S + S S++S
Sbjct: 243 AVMRLTSKALSSDTSSWS 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,709,797
Number of Sequences: 28952
Number of extensions: 192971
Number of successful extensions: 625
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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