Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0168
         (525 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3TKJ2 Cluster: Blastocyst blastocyst cDNA, RIKEN full-...    34   2.3  
UniRef50_Q9Y4G6 Cluster: Talin-2; n=98; Eumetazoa|Rep: Talin-2 -...    34   2.3  

>UniRef50_Q3TKJ2 Cluster: Blastocyst blastocyst cDNA, RIKEN
           full-length enriched library, clone:I1C0025P16
           product:Talin 2 homolog; n=14; Euteleostomi|Rep:
           Blastocyst blastocyst cDNA, RIKEN full-length enriched
           library, clone:I1C0025P16 product:Talin 2 homolog - Mus
           musculus (Mouse)
          Length = 321

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 156 VQLTLYVC--HCPIVKTKWVRSPTPIYE*TRFVKDRTHCSQTGARPARNIF 302
           V L+L +C  HC +VKT      T +Y+  R +++R   +QTG      +F
Sbjct: 4   VALSLKICVRHCNVVKTMQFEPSTAVYDACRVIRERVPEAQTGQASDYGLF 54


>UniRef50_Q9Y4G6 Cluster: Talin-2; n=98; Eumetazoa|Rep: Talin-2 -
           Homo sapiens (Human)
          Length = 2542

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 156 VQLTLYVC--HCPIVKTKWVRSPTPIYE*TRFVKDRTHCSQTGARPARNIF 302
           V L+L +C  HC +VKT      T +Y+  R +++R   +QTG      +F
Sbjct: 2   VALSLKICVRHCNVVKTMQFEPSTAVYDACRVIRERVPEAQTGQASDYGLF 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 450,874,605
Number of Sequences: 1657284
Number of extensions: 8055062
Number of successful extensions: 13888
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13888
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)