Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0168
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25320.1 68417.m03643 DNA-binding protein-related contains Pf...    28   3.3  
At2g31480.1 68415.m03845 expressed protein contains Pfam profile...    28   3.3  

>At4g25320.1 68417.m03643 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 404

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 358 SKSFNLKSKRNRVRFEKILKMFLAGLAPVCEQCVRSLTNRVYSY 227
           S SFN+ ++  + RFE++ K  +A  AP       + TN V+SY
Sbjct: 306 SISFNISAEERKARFERLNKS-VAIPAPTTSYTHVNTTNAVHSY 348


>At2g31480.1 68415.m03845 expressed protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 472

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 499 GERGFVSKEIIGFAVTRHRNPLSEPQYALPLL*ASKCYLINLYLPDQSKS 350
           G +GFV +    F++ + +N  S+P+  LP   ++     ++ LP   K+
Sbjct: 10  GSKGFVKRVTSTFSIRKKKNTTSDPKLLLPRSKSTGANYESMRLPQGKKA 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,737,810
Number of Sequences: 28952
Number of extensions: 178525
Number of successful extensions: 247
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)