Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0167
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 100 2e-22
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 99 4e-22
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.37
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 2.6
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 4.6
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 4.6
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 4.6
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 25 6.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.1
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 8.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 8.0
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 99.5 bits (237), Expect = 2e-22
Identities = 46/71 (64%), Positives = 55/71 (77%)
Frame = +2
Query: 260 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVXSPKQKD 439
GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S KD
Sbjct: 81 GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140
Query: 440 ELIIEGNSLED 472
E+IIEGNSLE+
Sbjct: 141 EIIIEGNSLEN 151
Score = 70.1 bits (164), Expect = 2e-13
Identities = 31/78 (39%), Positives = 52/78 (66%)
Frame = +3
Query: 24 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 203
+ I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61
Query: 204 KKELAAVRTVCSXVENML 257
+K A +RT S + NM+
Sbjct: 62 RKHNACIRTAYSIINNMI 79
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 98.7 bits (235), Expect = 4e-22
Identities = 45/71 (63%), Positives = 55/71 (77%)
Frame = +2
Query: 260 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVXSPKQKD 439
GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S KD
Sbjct: 81 GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140
Query: 440 ELIIEGNSLED 472
E+I+EGNSLE+
Sbjct: 141 EIILEGNSLEN 151
Score = 66.5 bits (155), Expect = 2e-12
Identities = 30/78 (38%), Positives = 50/78 (64%)
Frame = +3
Query: 24 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 203
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61
Query: 204 KKELAAVRTVCSXVENML 257
+K A +R+V S + NM+
Sbjct: 62 RKHNACIRSVYSIINNMI 79
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.1 bits (62), Expect = 0.37
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +3
Query: 51 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 218
K+PDG+ + SRL K P L F H +VD+ + L + E WF
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622
Query: 219 AVRTVCSXVENML 257
+ T+CS + N+L
Sbjct: 1623 VLATICSCLGNLL 1635
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 233 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 87
D P+G GS F+ V+H+N N+ ++ +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 227 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 105
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 4.6
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 217 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 107
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 319 VNGEVSIHSTHLVLEAFSYSFNMFSTCEQTVLTAASSFL 203
VN + +LV ++S N+F CE T +SFL
Sbjct: 882 VNPNTKVFCLYLVSFSYSIISNLFLGCETTERAQLASFL 920
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 168 PRLLKVEKWFGSKKELAAVRTVCSXVENMLKE 263
PRL+ +KW L A+ ++ E ++K+
Sbjct: 377 PRLIPSQKWSERHAALMAISSIAEGAEKLMKK 408
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.0 bits (52), Expect = 6.1
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 325 DTVNGEVSIHSTHLVLEAFSYSFNMFSTCEQTVLTAASSF--LDPNHFSTFRRRGFTMR 155
+ VN +IH T LV FS +N+FS L + + F LD + F R T +
Sbjct: 1485 ENVNSYNTIHLTPLVFSHFSSWWNLFSNNMSYPLRSGNLFPTLDSSPNKKFGRHLATFK 1543
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 77 MDRKPVWDFDFLICYNLLHVWALF 6
M+R P+ FDF+ N +H LF
Sbjct: 294 MERLPIPPFDFITSLNSIHEGLLF 317
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 24.6 bits (51), Expect = 8.0
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +3
Query: 42 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 221
+ +++PDG + + S + ++ L F + R + P + W K+
Sbjct: 456 EHMQVPDGYLLQLLSEVNSLNMVPAELATFFVESMLRPRKLEPPFYLQQCWGKIFKK--K 513
Query: 222 VRTVCSXVENMLKE*LKAS 278
T+C +E+ L E +KAS
Sbjct: 514 FTTICERIESTLHELVKAS 532
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,816
Number of Sequences: 5004
Number of extensions: 42192
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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