Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0167
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    100   5e-22
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   100   5e-22
03_06_0712 - 35683814-35684065,35685296-35685466                       27   6.0  
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491...    27   6.0  
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930     27   8.0  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  100 bits (240), Expect = 5e-22
 Identities = 44/72 (61%), Positives = 56/72 (77%)
 Frame = +2

Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVXSPKQ 433
           + GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K 
Sbjct: 80  ITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKV 139

Query: 434 KDELIIEGNSLE 469
           KDEL+++GN +E
Sbjct: 140 KDELVLDGNDIE 151



 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 38/80 (47%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
 Frame = +3

Query: 21  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 197
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 198 GSKKELAAVRTVCSXVENML 257
           G+++ +AA+RT  S V+N++
Sbjct: 61  GTRRTMAAIRTAISHVQNLI 80


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  100 bits (240), Expect = 5e-22
 Identities = 44/72 (61%), Positives = 56/72 (77%)
 Frame = +2

Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVXSPKQ 433
           + GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K 
Sbjct: 73  ITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKV 132

Query: 434 KDELIIEGNSLE 469
           KDEL+++GN +E
Sbjct: 133 KDELVLDGNDIE 144



 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 35/73 (47%), Positives = 56/73 (76%), Gaps = 3/73 (4%)
 Frame = +3

Query: 48  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 218
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 219 AVRTVCSXVENML 257
           A+RT  S V+N++
Sbjct: 61  AIRTAISHVQNLI 73


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 117 VLKRNF-KHLAVDIRMVNPRLLKVE 188
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


>02_05_0967 -
           33148283-33148524,33148602-33148881,33148959-33149151,
           33149244-33149324,33149395-33149520,33149758-33150137,
           33150367-33150394,33150816-33150979,33151920-33152039,
           33152168-33152416
          Length = 620

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 371 EKYIRRVKMAPGVTVVXSPKQKDELIIEGNSLEDG 475
           +K I+ +K++PG+ +V   K  + + ++  S+EDG
Sbjct: 374 DKNIQEIKISPGIMLVIYQKSANHVPLKILSIEDG 408


>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
          Length = 458

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 81  KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSXVENML 257
           K  ++   GP G +K   K+   +    +NPRL K+ +    KKEL  V    S V  ML
Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201

Query: 258 K 260
           +
Sbjct: 202 E 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,655,627
Number of Sequences: 37544
Number of extensions: 277177
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)