Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0167
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         95   3e-20
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                28   3.6  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     28   3.6  
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)                    28   3.6  
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 28   4.7  
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)            27   6.2  
SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  
SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)                27   8.2  
SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 42/80 (52%), Positives = 60/80 (75%)
 Frame = +3

Query: 21  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 200
           MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++  V    ++V+ WF 
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616

Query: 201 SKKELAAVRTVCSXVENMLK 260
           S+KELA V+T+ + +ENM+K
Sbjct: 617 SRKELACVKTIITHIENMIK 636



 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 32/50 (64%), Positives = 41/50 (82%)
 Frame = +2

Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 403
           +KGV  G++YKMRAVYAHFPIN    E  +++E+RNFLGEKY+RRV+M P
Sbjct: 635 IKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684


>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 182 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 90
           L  TR+ +  V+S   EV  E S  P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 235 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 92
           QT++T A  F D       RRR F+  +S   C + L R+P  P++ T
Sbjct: 85  QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 3   VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 116
           ++ +  +K++  + K K  DG+ VH K+   TV+ PRG
Sbjct: 98  LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +3

Query: 51  KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 185
           K+ DGL VH+ ++ V  K P+    + KR  + L A+ I + +P + KV
Sbjct: 4   KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52


>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
          Length = 197

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = -2

Query: 173 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 63
           TR YH NV   VF V        F  S G  N HQ  +  DR+P
Sbjct: 57  TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100


>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 340 ITLSGDTVNGEVSIHSTHLVLEAFSYSFNMFS 245
           +T+  D   G VS H+THLV  A S ++  F+
Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAYLSFA 204


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 35   SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 142
            S+ ++    R Y PC I SG++  APR    +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 78   VKSRLVTVKGPRGVLKRNFKHL 143
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
          Length = 757

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 486 QS*RPSSK-ELPSMISSSFCFGEXTTVTPGAIFTLLMYFSPKKLRISIIEL 337
           Q+ RP  K ELP++++      +  TV  G +F     F PK +R ++ E+
Sbjct: 148 QNGRPEEKKELPAIVAPYHSHRDELTVYDGLVFKGERLFIPKSMRHAMKEM 198


>SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 180 KVEKWFGSKKELAAVRTVCSXVENMLKE 263
           K EK    K+++AA+  +CS V+N L E
Sbjct: 718 KGEKGKSFKEKMAAITNICSTVQNALDE 745


>SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)
          Length = 739

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = -2

Query: 131 VPFENS-AGPFNCHQTRFHMD--RKPVW---DFDFLICYNLLH 21
           +PF     GP +C +TRF +D  R P W   D+  L+C  +++
Sbjct: 6   IPFNALIVGPTSCGKTRFVVDRLRGPFWVKFDYILLVCPTIVY 48


>SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 21/80 (26%), Positives = 33/80 (41%)
 Frame = -1

Query: 396 IFTLLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLTCSLXVNRLSSRR 217
           IF+ +  ++P+K + +I+ LP +         + A  L WKP    L   L +    S  
Sbjct: 18  IFSRVSGYTPRKRKTAILALPFLARPKWRPFGFVAFPLRWKPTERLLRRLLGLAARDSNN 77

Query: 216 QAPFWIRTISQPSGDEGLPC 157
            +   I     P GD   PC
Sbjct: 78  TSVLPI----APGGDTADPC 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,959,687
Number of Sequences: 59808
Number of extensions: 324674
Number of successful extensions: 815
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)