Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0167
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    99   2e-21
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    28   3.1  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related (...    27   7.2  
AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical ...    27   7.2  
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 42/72 (58%), Positives = 54/72 (75%)
 Frame = +2

Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVXSPKQ 433
           +KGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S  Q
Sbjct: 79  IKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQ 138

Query: 434 KDELIIEGNSLE 469
           KDE+++EGN ++
Sbjct: 139 KDEIVVEGNDVQ 150



 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 39/80 (48%), Positives = 59/80 (73%)
 Frame = +3

Query: 21  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 200
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 201 SKKELAAVRTVCSXVENMLK 260
            +KELAA+RTVCS ++NM+K
Sbjct: 61  VRKELAAIRTVCSHIKNMIK 80


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 298 HSTHLVLEAFSYSFNMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSTAKCLKF 128
           ++TH+ LE  S  F+ FS CE   + A+  S  D         +G ++R    +C  F
Sbjct: 182 NATHIKLEGVSVPFDNFSHCEDVRIHASKVSANDIQTLVEIAYKGSSLRFFYVRCDSF 239


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +2

Query: 263  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 400
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 403 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 269
           RC L   ++F +  +T LNN + + GD +++  +   S   VL  F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 149 NSQVFEVPFENSAGPFNCHQTRFHMDR 69
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 149 NSQVFEVPFENSAGPFNCHQTRFHMDR 69
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related
           (ectopic expressionof hox genes) protein 3 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 196 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 77
           NH   ++R+     M T K  +    TP G L +T  + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466


>AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical
           protein F58H7.1 protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 434 FVLESXRQSHQVPSLPF*CISHPRSY 357
           F LE     HQV ++PF C  +P+ Y
Sbjct: 507 FRLEDRYPQHQVDAVPFLCALNPKMY 532


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 253 MFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 134
           ++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 281 LYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical
           protein T05G11.2 protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 478 ETIFQRVAFND*FILLFWRVXDSHTRCH 395
           E +  R+A  D FI+LF+ V  S+T  H
Sbjct: 176 EEVATRIALLDFFIILFFNVIPSYTFAH 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,727,042
Number of Sequences: 27780
Number of extensions: 243879
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)